View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039-Insertion-7 (Length: 637)
Name: NF5039-Insertion-7
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039-Insertion-7 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 303 - 637
Target Start/End: Complemental strand, 7446360 - 7446026
Alignment:
| Q |
303 |
gaagaggaagagagaggtataccttggtttcaagaagacacttctcaagaatggtggattcatgaannnnnnnaagactgaagtactcttcttcaagttt |
402 |
Q |
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| T |
7446360 |
gaagaggaagagagaggtataccttggtttcaagaagacacttctcaagaatggtggattcatgaatttttttaagactgaagtactcttcttcaagttt |
7446261 |
T |
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| Q |
403 |
cttgttcttccacctagcccttcgattctggaaccatactgcaacttgtcttggatctaaaccaagctccattgcaagcctatccttcttctctgactca |
502 |
Q |
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| T |
7446260 |
cttgttcttccacctagcccttcgattctggaaccatactgcaacttgtcttggatctaaaccaagctccattgcaagcctatccttcttctctgactca |
7446161 |
T |
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| Q |
503 |
agtttatgttcatttccaaagttttcttccaaaatattcacttgttcatcactcaatttcctctttttgttcatgtcgttggcactgttttctccacctt |
602 |
Q |
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| T |
7446160 |
agtttatgttcatttccaaagttttcttccaaaatattcacttgttcatcactcaatttcctctttttgttcatgtcgttagcactgttttctccacctt |
7446061 |
T |
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| Q |
603 |
tgttcttcttactacgcttgcgtcttggctttggt |
637 |
Q |
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| T |
7446060 |
tgttcttcttactacgcttgcgtcttggctttggt |
7446026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 303 - 637
Target Start/End: Complemental strand, 7461304 - 7460970
Alignment:
| Q |
303 |
gaagaggaagagagaggtataccttggtttcaagaagacacttctcaagaatggtggattcatgaannnnnnnaagactgaagtactcttcttcaagttt |
402 |
Q |
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| T |
7461304 |
gaagaggaagaaagaggtataccttggtttcaaggagacacttctcaagaatggtggattcatgattttttttaagactgaagtactcttcttcaagttt |
7461205 |
T |
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| Q |
403 |
cttgttcttccacctagcccttcgattctggaaccatactgcaacttgtcttggatctaaaccaagctccattgcaagcctatccttcttctctgactca |
502 |
Q |
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| T |
7461204 |
cttgttcttccacctagcccttcgattctggaaccatactgcaacttgtcttggatctaaaccaagctccattgcaagcctatccttcttctctgactca |
7461105 |
T |
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| Q |
503 |
agtttatgttcatttccaaagttttcttccaaaatattcacttgttcatcactcaatttcctctttttgttcatgtcgttggcactgttttctccacctt |
602 |
Q |
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| T |
7461104 |
agtttatgttcatttccaaagttttcttccaaaatattcacttgttcatcactcaatttcctctttttgttcatgtcgttagcactgttttctccacctt |
7461005 |
T |
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| Q |
603 |
tgttcttcttactacgcttgcgtcttggctttggt |
637 |
Q |
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| T |
7461004 |
tgttcttcttactacgcttgcgtcttggctttggt |
7460970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 8 - 241
Target Start/End: Complemental strand, 7446652 - 7446419
Alignment:
| Q |
8 |
agtgtttctactctctatcaacaacatttagtggattaaactaagcaaacaacttttttagagctaaacgagaatagaaaaaatatcaagaccaccagag |
107 |
Q |
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| T |
7446652 |
agtgtttcttctctctatcaacaacatttagtggattaaactaagcaaacaacttttttagagctaaacgagaatagaaaaaatatcaagaccaccagag |
7446553 |
T |
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| Q |
108 |
aagaaacatggtaacatgcttgccctaaattgacgttactgctgttgtgttgagacaaataaaaacaaaacactatagtaatataatattgttggaatta |
207 |
Q |
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| T |
7446552 |
aagaaacatggtaacatgcttgccctaaattgacgttactggtgttgtgttgagacaaataaaaacaaaacactatagtaatataatattgttggaatta |
7446453 |
T |
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| Q |
208 |
aaaaatttatgtctagttataatccaatcaactg |
241 |
Q |
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| T |
7446452 |
aaaaatttatgtcaagttataatccaatccactg |
7446419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 79 - 203
Target Start/End: Complemental strand, 7461569 - 7461445
Alignment:
| Q |
79 |
gaatagaaaaaatatcaagaccaccagagaagaaacatggtaacatgcttgccctaaattgacgttactgctgttgtgttgagacaaataaaaacaaaac |
178 |
Q |
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| T |
7461569 |
gaataaaaaaaaaatcaagaccaccagagaagaaacatggtagcatgcttgccctaaattgacgttactagtgttgtgttgatacaaataaaaacaaaac |
7461470 |
T |
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| Q |
179 |
actatagtaatataatattgttgga |
203 |
Q |
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| T |
7461469 |
actatagtaatataatattgttgga |
7461445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 29 - 67
Target Start/End: Complemental strand, 7461632 - 7461594
Alignment:
| Q |
29 |
caacatttagtggattaaactaagcaaacaactttttta |
67 |
Q |
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| T |
7461632 |
caacatttagggtattaaactaagcaaacaactttttta |
7461594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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