View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5039-Insertion-8 (Length: 580)

Name: NF5039-Insertion-8
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5039-Insertion-8
NF5039-Insertion-8
[»] chr6 (6 HSPs)
chr6 (31-580)||(412982-413524)
chr6 (337-409)||(5053724-5053796)
chr6 (336-391)||(5096031-5096086)
chr6 (346-397)||(30679603-30679654)
chr6 (331-386)||(32945440-32945495)
chr6 (336-409)||(28085573-28085646)
[»] chr5 (7 HSPs)
chr5 (163-326)||(7433085-7433242)
chr5 (31-153)||(11655715-11655833)
chr5 (164-283)||(11655375-11655495)
chr5 (489-540)||(7430716-7430767)
chr5 (332-391)||(12576890-12576949)
chr5 (336-409)||(38685164-38685237)
chr5 (336-408)||(7640520-7640592)
[»] chr4 (9 HSPs)
chr4 (338-409)||(25755515-25755586)
chr4 (331-397)||(29209199-29209265)
chr4 (331-391)||(47372843-47372903)
chr4 (331-382)||(55029013-55029064)
chr4 (335-409)||(20105530-20105604)
chr4 (336-409)||(1777029-1777102)
chr4 (331-384)||(7970418-7970471)
chr4 (336-409)||(37798048-37798121)
chr4 (335-391)||(12443291-12443347)
[»] chr7 (7 HSPs)
chr7 (335-409)||(34341407-34341481)
chr7 (336-409)||(28208340-28208413)
chr7 (336-409)||(37618142-37618215)
chr7 (331-391)||(22174192-22174252)
chr7 (335-391)||(26741924-26741980)
chr7 (331-391)||(28858237-28858297)
chr7 (336-408)||(45836495-45836567)
[»] chr3 (5 HSPs)
chr3 (336-398)||(54279217-54279279)
chr3 (331-391)||(21862771-21862831)
chr3 (331-375)||(55244470-55244514)
chr3 (336-409)||(7895892-7895965)
chr3 (331-391)||(42026566-42026626)
[»] chr2 (7 HSPs)
chr2 (336-410)||(8180977-8181051)
chr2 (336-409)||(13443920-13443993)
chr2 (331-386)||(8197576-8197631)
chr2 (331-386)||(8202336-8202391)
chr2 (347-386)||(26202945-26202984)
chr2 (331-389)||(32402692-32402750)
chr2 (335-409)||(33504420-33504494)
[»] chr1 (12 HSPs)
chr1 (331-385)||(10569107-10569161)
chr1 (336-409)||(9592931-9593004)
chr1 (331-387)||(6025797-6025853)
chr1 (331-391)||(38869074-38869134)
chr1 (331-374)||(40920576-40920619)
chr1 (336-409)||(25979243-25979316)
chr1 (336-409)||(34792361-34792434)
chr1 (336-409)||(52921277-52921350)
chr1 (338-386)||(2545134-2545182)
chr1 (331-383)||(7124333-7124385)
chr1 (334-386)||(27072522-27072574)
chr1 (331-395)||(52160269-52160333)
[»] chr8 (4 HSPs)
chr8 (333-409)||(12611691-12611767)
chr8 (331-391)||(23492226-23492286)
chr8 (336-409)||(25473415-25473488)
chr8 (335-391)||(38391923-38391979)
[»] scaffold0024 (1 HSPs)
scaffold0024 (336-409)||(82915-82988)


Alignment Details
Target: chr6 (Bit Score: 491; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 31 - 580
Target Start/End: Original strand, 412982 - 413524
Alignment:
Q  31 ttaaaagcttctttcttattctctttaatgatagggagggatgtagccaagcgacttcaatctgttttaaatttatgtcattataatttgaggagttgaa 130  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  412982 ttaaaagcttctttcttattctctttaatgatagggaggaatgtagccaagcgacttcaatctgttttaaatttatgtcattataatttgaggagttgaa 413081  T
Q  131 aataagcagaaaggctattcttggcattatattttcacatgtgagcatcgtgattcaagcaagtctctttgatttctctaactcatttggaataatttgt 230  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  413082 aataaacagaaaggctattcttggcattatattttcacatgtgagcatcgcgattcaagcaagtctctttgatttctctaactcatttggaataatttgt 413181  T
Q  231 attcatgacatttctcatgtggaaaattctgatattactcaatagactagtatagtatccagtccttcatattccgccattgttttgtgcagtctataac 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||  ||||    
T  413182 attcatgacatttctcatgtggaaaattctgatattactcaatagac-----tagtatccagtccttcatattccgccattgttttgtgcagtc--taac 413274  T
Q  331 gatagaaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccatttaatagaataaggcttcattaatgttgctgctacata 430  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||    
T  413275 gatagaaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccacttaatagaataaggtttcgttaatgttgctgctacata 413374  T
Q  431 agcttcaactataaatttccaagatattgaataaattgcatgttgtaatgatagaaattgaaaatgcattgtggaattggttggacatttgtaatgaaca 530  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  413375 agcttcaactataaatttccaagatattgaataaattgcatgttgtaatgatagaaattgaaaatgcattgtggaattggttggacatttgtaatgaaca 413474  T
Q  531 caggattttcgagagctatatattgtaagtgattctttaaagtctattgg 580  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  413475 caggattttcaagagctatatattgtaagtgattctttaaagtctattgg 413524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 337 - 409
Target Start/End: Original strand, 5053724 - 5053796
Alignment:
Q  337 aatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccatttaatagaataaggctt 409  Q
    |||||||||||||||| |  ||| | | ||| |||||||||||||||||| |||||||| ||| |||||||||    
T  5053724 aatatggtatatgataaagcattgttgcgtcgtttgatcaatgtagccgaccccatttagtaggataaggctt 5053796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 391
Target Start/End: Original strand, 5096031 - 5096086
Alignment:
Q  336 aaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatccca 391  Q
    ||||||||| |||||||||| ||||| | || |||||||| |||||||||||||||    
T  5096031 aaatatggtttatgatagaacattatggcgtaatttgatctatgtagccgatccca 5096086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 397
Target Start/End: Original strand, 30679603 - 30679654
Alignment:
Q  346 tatgatagaagattatagtgtcatttgatcaatgtagccgatcccatttaat 397  Q
    |||||||||| ||||||  ||||||||||| ||||||||||||||| |||||    
T  30679603 tatgatagaacattataacgtcatttgatctatgtagccgatcccacttaat 30679654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 386
Target Start/End: Original strand, 32945440 - 32945495
Alignment:
Q  331 gatagaaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccga 386  Q
    |||||||||||  |||||||||||| ||||| ||||| ||||||| ||||||||||    
T  32945440 gatagaaatattttatatgatagaacattatggtgtcgtttgatccatgtagccga 32945495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 409
Target Start/End: Original strand, 28085573 - 28085646
Alignment:
Q  336 aaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccatttaatagaataaggctt 409  Q
    |||| |||| |||||||||| | ||| ||||||||||||| |||||||||| |||| ||| | | |||||||||    
T  28085573 aaatttggtgtatgatagaacactatggtgtcatttgatccatgtagccgaccccacttagtgggataaggctt 28085646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 8e-47; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 163 - 326
Target Start/End: Original strand, 7433085 - 7433242
Alignment:
Q  163 tttcacatgtgagcatcgtgattcaagcaagtctctttgatttctctaactcatttggaataatttgtattcatgacatttctcatgtggaaaattctga 262  Q
    |||||||||||||||||| |||| |||  ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  7433085 tttcacatgtgagcatcgcgatt-aagtcagtctctttgatttctctaactcatttggaacaatttgtattcaggacatttctcatgtggaaaattctga 7433183  T
Q  263 tattactcaatagactagtatagtatccagtccttcatattccgccattgttttgtgcagtcta 326  Q
    |||||||||||||||     ||||||||||||| |||||||| |||| ||||||| || |||||    
T  7433184 tattactcaatagac-----tagtatccagtccctcatattctgccactgttttgcgcggtcta 7433242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 31 - 153
Target Start/End: Complemental strand, 11655833 - 11655715
Alignment:
Q  31 ttaaaagcttctttcttattctctttaatgatagggagggatgtagccaagcgacttcaatctgttttaaa-tttatgtcattataatttgaggagttga 129  Q
    |||||||||||||||||||||||||||||||||||||    ||| ||||||| |||||| ||||||||||| ||||||||||| |||||| |||||||||    
T  11655833 ttaaaagcttctttcttattctctttaatgataggga----tgt-gccaagccacttcagtctgttttaaagtttatgtcattgtaatttcaggagttga 11655739  T
Q  130 aaataagcagaaaggctattcttg 153  Q
    ||||||||||||||||||||||||    
T  11655738 aaataagcagaaaggctattcttg 11655715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 164 - 283
Target Start/End: Complemental strand, 11655495 - 11655375
Alignment:
Q  164 ttcacatgtgagcatcgtgattcaagcaagtctctttgatttc-tctaactcatttggaataatttgtattcatgacatttctcatgtggaaaattctga 262  Q
    ||||||| | ||||| |||||| ||||||||| |||||||||| | |||||||||| ||| ||| |||||||| ||||||||| ||| || | ||  |||    
T  11655495 ttcacatcttagcattgtgattaaagcaagtcgctttgatttcctttaactcattttgaacaatctgtattcaggacatttcttatgcgggagatattga 11655396  T
Q  263 tattactcaatagactagtat 283  Q
    ||||||| |||||||||||||    
T  11655395 tattacttaatagactagtat 11655375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 489 - 540
Target Start/End: Complemental strand, 7430767 - 7430716
Alignment:
Q  489 tgaaaatgcattgtggaattggttggacatttgtaatgaacacaggattttc 540  Q
    ||||||||  |||||||||||| ||||||||||||||||||| ||| |||||    
T  7430767 tgaaaatgtcttgtggaattggctggacatttgtaatgaacataggcttttc 7430716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 391
Target Start/End: Complemental strand, 12576949 - 12576890
Alignment:
Q  332 atagaaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatccca 391  Q
    |||||||||||||||||||||||  ||||| ||||||||| ||  |||||||||| ||||    
T  12576949 atagaaatatggtatatgatagaccattatggtgtcattttatacatgtagccgacccca 12576890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 409
Target Start/End: Original strand, 38685164 - 38685237
Alignment:
Q  336 aaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccatttaatagaataaggctt 409  Q
    ||||||||| |||||||||| | ||| | ||||||||||| |||||||||| |||| ||| | | |||||||||    
T  38685164 aaatatggtttatgatagaacaatatggcgtcatttgatccatgtagccgaccccacttagtgggataaggctt 38685237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 336 - 408
Target Start/End: Complemental strand, 7640592 - 7640520
Alignment:
Q  336 aaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccatttaatagaataaggct 408  Q
    ||||||||| |||||||||| | ||  | || |||||||| ||||||||||||||| ||| | ||||||||||    
T  7640592 aaatatggtttatgatagaacactacggcgtaatttgatccatgtagccgatcccacttagtggaataaggct 7640520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 409
Target Start/End: Original strand, 25755515 - 25755586
Alignment:
Q  338 atatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccatttaatagaataaggctt 409  Q
    ||||| ||||| |||||| ||||||||||||||||||| ||| || |||||||||||||| | |||||||||    
T  25755515 atatgatatatcatagaacattatagtgtcatttgatccatgaagtcgatcccatttaatgggataaggctt 25755586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 397
Target Start/End: Complemental strand, 29209265 - 29209199
Alignment:
Q  331 gatagaaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccatttaat 397  Q
    ||||||||||||||||||||||||  ||||| | ||  |||||||||||||||||| |||| |||||    
T  29209265 gatagaaatatggtatatgatagagcattatggcgttgtttgatcaatgtagccgaccccacttaat 29209199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 391
Target Start/End: Original strand, 47372843 - 47372903
Alignment:
Q  331 gatagaaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatccca 391  Q
    |||||||||||||||||| |||||| ||||| | ||| ||||||| |||||||| ||||||    
T  47372843 gatagaaatatggtatattatagaacattatggagtcgtttgatccatgtagcccatccca 47372903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 382
Target Start/End: Original strand, 55029013 - 55029064
Alignment:
Q  331 gatagaaatatggtatatgatagaagattatagtgtcatttgatcaatgtag 382  Q
    |||||||||||| |||||||||||| ||||| | |||||||||| |||||||    
T  55029013 gatagaaatatgttatatgatagaacattatggcgtcatttgattaatgtag 55029064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 335 - 409
Target Start/End: Complemental strand, 20105604 - 20105530
Alignment:
Q  335 gaaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccatttaatagaataaggctt 409  Q
    ||||||||||||||||||| | ||||| | ||||||||||| |||||||| ||| || ||| ||| | |||||||    
T  20105604 gaaatatggtatatgataggacattatggcgtcatttgatccatgtagccaatctcacttagtaggacaaggctt 20105530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 409
Target Start/End: Complemental strand, 1777102 - 1777029
Alignment:
Q  336 aaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccatttaatagaataaggctt 409  Q
    |||| |||| |||||||||| | ||| | ||||||||||| |||||||||| |||| ||||| | |||||||||    
T  1777102 aaatttggtgtatgatagaacagtatggcgtcatttgatccatgtagccgaccccacttaatgggataaggctt 1777029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 384
Target Start/End: Complemental strand, 7970471 - 7970418
Alignment:
Q  331 gatagaaatatggtatatgatagaagattatagtgtcatttgatcaatgtagcc 384  Q
    ||||||||||| |||||||||| || ||||| ||||| ||||||| ||||||||    
T  7970471 gatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 7970418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 409
Target Start/End: Original strand, 37798048 - 37798121
Alignment:
Q  336 aaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccatttaatagaataaggctt 409  Q
    ||||||||| |||||||||| | |||   ||||||||||||||||||||||  ||||||| | | |||||||||    
T  37798048 aaatatggtttatgatagaacaatatgacgtcatttgatcaatgtagccgactccatttagtgggataaggctt 37798121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 335 - 391
Target Start/End: Original strand, 12443291 - 12443347
Alignment:
Q  335 gaaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatccca 391  Q
    |||||||||| |||||||||| ||||| |  | |||||||| |||||||||||||||    
T  12443291 gaaatatggtttatgatagaacattatggcataatttgatccatgtagccgatccca 12443347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 335 - 409
Target Start/End: Complemental strand, 34341481 - 34341407
Alignment:
Q  335 gaaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccatttaatagaataaggctt 409  Q
    |||||||||| |||||||||| ||||| | || |||||| |||||||||||| |||||||| | |||||||||||    
T  34341481 gaaatatggtttatgatagaacattatggcgtaatttgaccaatgtagccgaccccatttagtggaataaggctt 34341407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 409
Target Start/End: Complemental strand, 28208413 - 28208340
Alignment:
Q  336 aaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccatttaatagaataaggctt 409  Q
    ||||||||| |||||||||| | ||| | ||||||||||| |||||||||| |||| ||| | | |||||||||    
T  28208413 aaatatggtttatgatagaacactatggcgtcatttgatccatgtagccgaccccacttagtgggataaggctt 28208340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 409
Target Start/End: Original strand, 37618142 - 37618215
Alignment:
Q  336 aaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccatttaatagaataaggctt 409  Q
    |||| |||| |||||||||| | ||| ||||||||||||| |||||||||| |||| ||| | | |||||||||    
T  37618142 aaatttggtgtatgatagaacactatggtgtcatttgatccatgtagccgaccccacttagtgggataaggctt 37618215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 331 - 391
Target Start/End: Original strand, 22174192 - 22174252
Alignment:
Q  331 gatagaaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatccca 391  Q
    |||||||||||||||| |||||||| ||||| | ||  ||||||| |||||||||| ||||    
T  22174192 gatagaaatatggtatgtgatagaacattatggcgttgtttgatccatgtagccgacccca 22174252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 335 - 391
Target Start/End: Complemental strand, 26741980 - 26741924
Alignment:
Q  335 gaaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatccca 391  Q
    |||||||||| |||||||||| ||||| | || |||||||||||||| || ||||||    
T  26741980 gaaatatggtttatgatagaacattatggcgtaatttgatcaatgtaaccaatccca 26741924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 331 - 391
Target Start/End: Original strand, 28858237 - 28858297
Alignment:
Q  331 gatagaaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatccca 391  Q
    |||||||||||  ||||||||||||  ||||  | ||||||||||||||||||||| ||||    
T  28858237 gatagaaatattttatatgatagaacgttatgatctcatttgatcaatgtagccgacccca 28858297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 336 - 408
Target Start/End: Complemental strand, 45836567 - 45836495
Alignment:
Q  336 aaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccatttaatagaataaggct 408  Q
    ||||||||| |||||||||| | ||| | ||||||||||| |||||||||| |||| ||| | | ||||||||    
T  45836567 aaatatggtttatgatagaacactatggcgtcatttgatccatgtagccgaccccacttagtgggataaggct 45836495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 398
Target Start/End: Original strand, 54279217 - 54279279
Alignment:
Q  336 aaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccatttaata 398  Q
    |||| |||| |||||||||| | ||| | ||||||||||||||||||||||||||| ||||||    
T  54279217 aaatttggtgtatgatagaacactatggcgtcatttgatcaatgtagccgatcccacttaata 54279279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 391
Target Start/End: Complemental strand, 21862831 - 21862771
Alignment:
Q  331 gatagaaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatccca 391  Q
    |||||||||||| |||  ||||||||| ||| ||||||||||||| |||||||||| ||||    
T  21862831 gatagaaatatgatattggatagaagaatatggtgtcatttgatccatgtagccgacccca 21862771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 375
Target Start/End: Original strand, 55244470 - 55244514
Alignment:
Q  331 gatagaaatatggtatatgatagaagattatagtgtcatttgatc 375  Q
    ||||||||||||||||||||||||| ||||| ||||| |||||||    
T  55244470 gatagaaatatggtatatgatagaacattatggtgtcgtttgatc 55244514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 409
Target Start/End: Complemental strand, 7895965 - 7895892
Alignment:
Q  336 aaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccatttaatagaataaggctt 409  Q
    |||| |||| |||||||||| | ||| | ||||||||||| |||||||||| |||| ||||| | |||||||||    
T  7895965 aaatttggtgtatgatagaacactatggcgtcatttgatccatgtagccgaccccacttaatgggataaggctt 7895892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 331 - 391
Target Start/End: Complemental strand, 42026626 - 42026566
Alignment:
Q  331 gatagaaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatccca 391  Q
    ||||||||||||||||||||||||| ||||| | || |||||||  || ||||||| ||||    
T  42026626 gatagaaatatggtatatgatagaacattatggcgttatttgattcatttagccgacccca 42026566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 410
Target Start/End: Original strand, 8180977 - 8181051
Alignment:
Q  336 aaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccatttaatagaataaggcttc 410  Q
    |||| |||| |||||||||| | ||||||||||||||||| |||||||||| |||| ||| | | ||||||||||    
T  8180977 aaatttggtgtatgatagaacactatagtgtcatttgatccatgtagccgaccccacttagtgggataaggcttc 8181051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 336 - 409
Target Start/End: Complemental strand, 13443993 - 13443920
Alignment:
Q  336 aaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccatttaatagaataaggctt 409  Q
    ||||||||| ||| |||||| ||||| | ||||||||||| |||||||||| |||||||| | | |||||||||    
T  13443993 aaatatggtttattatagaacattatggcgtcatttgatcgatgtagccgaccccatttagtgggataaggctt 13443920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 386
Target Start/End: Complemental strand, 8197631 - 8197576
Alignment:
Q  331 gatagaaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccga 386  Q
    |||||||||||| |||||||||||| ||||| | ||| ||||||| ||||||||||    
T  8197631 gatagaaatatgatatatgatagaatattatggcgtcgtttgatccatgtagccga 8197576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 386
Target Start/End: Complemental strand, 8202391 - 8202336
Alignment:
Q  331 gatagaaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccga 386  Q
    |||||||||||| |||||||||||| ||||| | ||| ||||||| ||||||||||    
T  8202391 gatagaaatatgatatatgatagaatattatggcgtcgtttgatccatgtagccga 8202336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 386
Target Start/End: Complemental strand, 26202984 - 26202945
Alignment:
Q  347 atgatagaagattatagtgtcatttgatcaatgtagccga 386  Q
    ||||||||||||||||| ||||||||||| ||||||||||    
T  26202984 atgatagaagattatagcgtcatttgatccatgtagccga 26202945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 331 - 389
Target Start/End: Original strand, 32402692 - 32402750
Alignment:
Q  331 gatagaaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcc 389  Q
    |||||||||| |||||||||||||| ||||| || |||||||||| | |||| ||||||    
T  32402692 gatagaaataaggtatatgatagaacattatggtttcatttgatccacgtagacgatcc 32402750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 335 - 409
Target Start/End: Original strand, 33504420 - 33504494
Alignment:
Q  335 gaaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccatttaatagaataaggctt 409  Q
    ||||||||||||||||||||| ||||| | || |||||||| || ||||||| |||| ||| | | |||||||||    
T  33504420 gaaatatggtatatgatagaacattatggcgtaatttgatccatctagccgaccccacttagtgggataaggctt 33504494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 385
Target Start/End: Complemental strand, 10569161 - 10569107
Alignment:
Q  331 gatagaaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccg 385  Q
    ||||||||||| ||||||||||||| |||||| | |||||||||| |||||||||    
T  10569161 gatagaaatatcgtatatgatagaacattataatatcatttgatccatgtagccg 10569107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 336 - 409
Target Start/End: Original strand, 9592931 - 9593004
Alignment:
Q  336 aaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccatttaatagaataaggctt 409  Q
    |||| |||| |||||||||| | ||||| ||||||||||| |||||||||| |||| ||||| | |||||||||    
T  9592931 aaatttggtgtatgatagaacactatagcgtcatttgatccatgtagccgaccccacttaatgggataaggctt 9593004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 387
Target Start/End: Original strand, 6025797 - 6025853
Alignment:
Q  331 gatagaaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgat 387  Q
    |||||||||||||||| |||||||| || || | ||||||||||| |||||||||||    
T  6025797 gatagaaatatggtatctgatagaacatgatggcgtcatttgatccatgtagccgat 6025853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 391
Target Start/End: Original strand, 38869074 - 38869134
Alignment:
Q  331 gatagaaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatccca 391  Q
    |||||| |||||||||||||||||| ||||| | ||| ||||||| |||||||||| ||||    
T  38869074 gatagatatatggtatatgatagaacattatggcgtcgtttgatccatgtagccgacccca 38869134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 374
Target Start/End: Complemental strand, 40920619 - 40920576
Alignment:
Q  331 gatagaaatatggtatatgatagaagattatagtgtcatttgat 374  Q
    ||||||||||||||||||||||||| ||||| ||||| ||||||    
T  40920619 gatagaaatatggtatatgatagaatattatggtgtcttttgat 40920576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 409
Target Start/End: Complemental strand, 25979316 - 25979243
Alignment:
Q  336 aaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccatttaatagaataaggctt 409  Q
    ||||||||| |||||||||| | ||| | ||||||||||| |||||||||| |||| ||| | | |||||||||    
T  25979316 aaatatggtttatgatagaacactatggcgtcatttgatccatgtagccgaccccacttagtgggataaggctt 25979243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 409
Target Start/End: Complemental strand, 34792434 - 34792361
Alignment:
Q  336 aaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccatttaatagaataaggctt 409  Q
    |||| |||| |||||||||| | ||| | ||||||||||| |||||||||| |||| ||||| | |||||||||    
T  34792434 aaatttggtttatgatagaacactatggcgtcatttgatccatgtagccgaccccacttaatgggataaggctt 34792361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 409
Target Start/End: Original strand, 52921277 - 52921350
Alignment:
Q  336 aaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccatttaatagaataaggctt 409  Q
    ||||||||| |||||||||| | ||| | ||||||||||| |||||||||| |||| ||| | | |||||||||    
T  52921277 aaatatggtttatgatagaacactattgcgtcatttgatccatgtagccgaccccacttagtgggataaggctt 52921350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 338 - 386
Target Start/End: Complemental strand, 2545182 - 2545134
Alignment:
Q  338 atatggtatatgatagaagattatagtgtcatttgatcaatgtagccga 386  Q
    ||||| |||||||||||| ||||| ||||| |||||||||| |||||||    
T  2545182 atatgatatatgatagaacattatggtgtcgtttgatcaatttagccga 2545134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 331 - 383
Target Start/End: Original strand, 7124333 - 7124385
Alignment:
Q  331 gatagaaatatggtatatgatagaagattatagtgtcatttgatcaatgtagc 383  Q
    ||||||||||||||||| ||||||  ||||| ||||| ||||||| |||||||    
T  7124333 gatagaaatatggtataggatagagcattatggtgtcgtttgatccatgtagc 7124385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 334 - 386
Target Start/End: Complemental strand, 27072574 - 27072522
Alignment:
Q  334 agaaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccga 386  Q
    ||||||||||| |||||||||| ||||| | || |||||||| ||||||||||    
T  27072574 agaaatatggtttatgatagaacattatggcgtaatttgatccatgtagccga 27072522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 331 - 395
Target Start/End: Complemental strand, 52160333 - 52160269
Alignment:
Q  331 gatagaaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccattta 395  Q
    |||||||||||| |||||||||||| ||||| ||| ||||||||  || ||||||| | ||||||    
T  52160333 gatagaaatatgatatatgatagaatattatggtgacatttgatgcatatagccgacctcattta 52160269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 333 - 409
Target Start/End: Original strand, 12611691 - 12611767
Alignment:
Q  333 tagaaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccatttaatagaataaggctt 409  Q
    |||||||||| |||||| |||||  |||| ||||| ||||||| ||||||||||||||| ||| | | |||||||||    
T  12611691 tagaaatatgatatatgttagaactttatggtgtcgtttgatccatgtagccgatcccaattagtgggataaggctt 12611767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 391
Target Start/End: Original strand, 23492226 - 23492286
Alignment:
Q  331 gatagaaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatccca 391  Q
    |||||||||||| |||||||||||| | ||| ||||||||| ||| |||||||||| ||||    
T  23492226 gatagaaatatgatatatgatagaacactatggtgtcatttaatccatgtagccgacccca 23492286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 409
Target Start/End: Complemental strand, 25473488 - 25473415
Alignment:
Q  336 aaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccatttaatagaataaggctt 409  Q
    |||| |||| |||||||||| | ||||| ||||||||||| |||||||||| |||| ||| | | |||||||||    
T  25473488 aaatttggtgtatgatagaacactatagcgtcatttgatccatgtagccgaccccacttagtgggataaggctt 25473415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 335 - 391
Target Start/End: Complemental strand, 38391979 - 38391923
Alignment:
Q  335 gaaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatccca 391  Q
    ||||||||||||||||||||| ||||| | || |||| ||| |||| ||||||||||    
T  38391979 gaaatatggtatatgatagaatattatggcgtaatttcatccatgtggccgatccca 38391923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 409
Target Start/End: Original strand, 82915 - 82988
Alignment:
Q  336 aaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccatttaatagaataaggctt 409  Q
    ||||||| | |||||||||| | |||   ||||||||||| |||||||||| |||| ||||| |||||||||||    
T  82915 aaatatgatttatgatagaacactatgacgtcatttgatccatgtagccgaccccacttaatggaataaggctt 82988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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