View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5039_1D_high_1 (Length: 1103)

Name: NF5039_1D_high_1
Description: NF5039_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5039_1D_high_1
NF5039_1D_high_1
[»] chr2 (23 HSPs)
chr2 (21-839)||(42635048-42635831)
chr2 (26-272)||(42628917-42629159)
chr2 (942-1079)||(42635933-42636070)
chr2 (23-236)||(42640068-42640281)
chr2 (344-499)||(5139963-5140114)
chr2 (340-481)||(864111-864248)
chr2 (340-456)||(7709779-7709894)
chr2 (330-431)||(37285172-37285273)
chr2 (335-443)||(6951724-6951833)
chr2 (335-453)||(23403724-23403842)
chr2 (342-443)||(8503809-8503909)
chr2 (358-456)||(9132273-9132371)
chr2 (356-498)||(14960642-14960780)
chr2 (518-599)||(42629183-42629266)
chr2 (340-431)||(35714531-35714621)
chr2 (328-454)||(12988040-12988166)
chr2 (340-431)||(27183809-27183904)
chr2 (340-431)||(27833351-27833446)
chr2 (328-411)||(21215341-21215422)
chr2 (354-429)||(15358705-15358780)
chr2 (340-415)||(42763774-42763849)
chr2 (340-422)||(21447172-21447254)
chr2 (335-368)||(9132267-9132300)
[»] chr4 (16 HSPs)
chr4 (330-499)||(37306399-37306564)
chr4 (343-497)||(31699474-31699624)
chr4 (329-499)||(43480264-43480430)
chr4 (340-497)||(51475159-51475312)
chr4 (326-431)||(50251510-50251615)
chr4 (335-500)||(6540251-6540412)
chr4 (335-454)||(30111795-30111913)
chr4 (380-437)||(51823131-51823188)
chr4 (382-455)||(5994940-5995013)
chr4 (356-422)||(16650521-16650587)
chr4 (382-456)||(27654511-27654585)
chr4 (388-440)||(27362638-27362690)
chr4 (356-431)||(21710578-21710652)
chr4 (340-427)||(26369048-26369135)
chr4 (340-422)||(49738954-49739036)
chr4 (375-420)||(27789954-27789999)
[»] chr8 (23 HSPs)
chr8 (334-499)||(6580856-6581016)
chr8 (335-456)||(33440536-33440657)
chr8 (335-498)||(28700581-28700740)
chr8 (326-443)||(45057954-45058071)
chr8 (335-440)||(30085426-30085531)
chr8 (335-456)||(1311472-1311593)
chr8 (352-431)||(33133475-33133554)
chr8 (336-426)||(35188416-35188506)
chr8 (340-433)||(12212155-12212248)
chr8 (340-433)||(12456583-12456676)
chr8 (400-481)||(16896336-16896413)
chr8 (343-437)||(14022030-14022124)
chr8 (347-440)||(13990490-13990583)
chr8 (356-416)||(31703822-31703882)
chr8 (340-440)||(34434946-34435046)
chr8 (392-431)||(31024183-31024222)
chr8 (329-412)||(38695671-38695754)
chr8 (356-426)||(902419-902489)
chr8 (335-425)||(16441832-16441922)
chr8 (352-435)||(4480286-4480369)
chr8 (405-440)||(34172507-34172542)
chr8 (335-440)||(6387611-6387716)
chr8 (329-426)||(35494150-35494246)
[»] chr1 (19 HSPs)
chr1 (335-497)||(24886065-24886223)
chr1 (335-455)||(19078939-19079059)
chr1 (335-455)||(19126827-19126947)
chr1 (340-497)||(29068111-29068264)
chr1 (335-443)||(932007-932115)
chr1 (335-455)||(31602087-31602207)
chr1 (340-455)||(14562565-14562680)
chr1 (335-410)||(11709656-11709731)
chr1 (352-456)||(16173053-16173156)
chr1 (352-417)||(52444448-52444512)
chr1 (340-427)||(43275838-43275925)
chr1 (344-455)||(17642388-17642497)
chr1 (338-456)||(8050003-8050121)
chr1 (335-415)||(11135814-11135894)
chr1 (328-379)||(19079022-19079073)
chr1 (328-379)||(19126910-19126961)
chr1 (390-433)||(24733928-24733971)
chr1 (413-456)||(31602093-31602136)
chr1 (388-433)||(24733817-24733862)
[»] chr5 (25 HSPs)
chr5 (335-499)||(30892135-30892295)
chr5 (330-497)||(17190604-17190769)
chr5 (330-456)||(18237168-18237294)
chr5 (335-497)||(42958466-42958624)
chr5 (343-498)||(5990513-5990664)
chr5 (331-440)||(32153741-32153850)
chr5 (340-426)||(41020240-41020326)
chr5 (326-426)||(34320922-34321022)
chr5 (335-431)||(28436460-28436556)
chr5 (330-417)||(10393791-10393878)
chr5 (330-414)||(27726818-27726902)
chr5 (352-443)||(2976559-2976650)
chr5 (346-456)||(40699511-40699622)
chr5 (354-456)||(26435319-26435420)
chr5 (329-379)||(26435382-26435432)
chr5 (328-409)||(16875283-16875364)
chr5 (343-411)||(2406004-2406072)
chr5 (352-440)||(34457661-34457748)
chr5 (328-368)||(40699498-40699538)
chr5 (340-419)||(26072174-26072253)
chr5 (366-440)||(1249028-1249102)
chr5 (356-418)||(6198601-6198663)
chr5 (345-415)||(42224626-42224696)
chr5 (326-379)||(18237153-18237206)
chr5 (338-379)||(22524395-22524436)
[»] chr7 (21 HSPs)
chr7 (330-456)||(557409-557535)
chr7 (336-431)||(39237689-39237784)
chr7 (335-456)||(47822007-47822128)
chr7 (340-497)||(36738485-36738643)
chr7 (347-501)||(41873427-41873577)
chr7 (335-455)||(43929994-43930112)
chr7 (352-454)||(17878725-17878827)
chr7 (356-499)||(42815604-42815743)
chr7 (326-456)||(45508529-45508657)
chr7 (364-426)||(48745290-48745352)
chr7 (375-440)||(29310470-29310535)
chr7 (360-440)||(32377306-32377386)
chr7 (332-440)||(25695904-25696012)
chr7 (374-427)||(16082817-16082870)
chr7 (346-431)||(46947819-46947903)
chr7 (335-422)||(49160314-49160401)
chr7 (354-431)||(3399043-3399124)
chr7 (335-419)||(26703465-26703549)
chr7 (329-408)||(32000434-32000514)
chr7 (332-367)||(22159050-22159085)
chr7 (332-367)||(22217758-22217793)
[»] chr6 (5 HSPs)
chr6 (335-481)||(32439504-32439646)
chr6 (335-497)||(7447561-7447718)
chr6 (353-452)||(17221547-17221646)
chr6 (333-455)||(30479895-30480018)
chr6 (394-437)||(28030569-28030612)
[»] chr3 (19 HSPs)
chr3 (343-497)||(48543138-48543288)
chr3 (335-497)||(54186924-54187082)
chr3 (335-494)||(29235675-29235832)
chr3 (335-441)||(13639430-13639536)
chr3 (335-468)||(38602836-38602967)
chr3 (315-443)||(46893391-46893517)
chr3 (330-496)||(50320436-50320597)
chr3 (352-456)||(20909325-20909429)
chr3 (334-440)||(28215775-28215881)
chr3 (335-426)||(42780698-42780789)
chr3 (329-427)||(46156684-46156780)
chr3 (330-395)||(45800738-45800801)
chr3 (335-415)||(27243120-27243200)
chr3 (372-438)||(26223190-26223256)
chr3 (356-417)||(357833-357894)
chr3 (332-377)||(3770541-3770586)
chr3 (387-456)||(54140813-54140882)
chr3 (329-415)||(50661541-50661627)
chr3 (403-440)||(1741335-1741372)
[»] scaffold0922 (1 HSPs)
scaffold0922 (352-431)||(710-789)
[»] scaffold0147 (1 HSPs)
scaffold0147 (328-455)||(28331-28458)
[»] scaffold0294 (1 HSPs)
scaffold0294 (364-425)||(17925-17985)


Alignment Details
Target: chr2 (Bit Score: 478; Significance: 0; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 21 - 839
Target Start/End: Original strand, 42635048 - 42635831
Alignment:
Q  21 aatttggcccgcataacaaggaccttgtttgcaccctgtgccacaatatggatcagtgttaccacaatatccatgttcgctacaacataagccttcctca 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42635048 aatttggcccgcataacaaggaccttgtttgcaccctgtgccacaatatggatcagtgttaccacaatatccatgttcgctacaacataagccttcctca 42635147  T
Q  121 cacccacaattttgagcactcgtattttttgaaaccatgatcataataagaaaggttatagcaagttttgctatagacatgcttagtaacttttttccca 220  Q
    ||||||||||||||||||||||||||||||||||                   |||||||||||||||| |||||||||||||| |||||||||||||||    
T  42635148 cacccacaattttgagcactcgtattttttgaaa-------------------ggttatagcaagttttactatagacatgcttggtaacttttttccca 42635228  T
Q  221 tcatagtgatattatgggtgggaggtattgaagttgagttaagatatttaatgaggtagtagagatgcggttagcaagaccctatttatattgatgagga 320  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| || |||||| |||  | |      |||||||||||| |||||    
T  42635229 tcatagtgatattattggtgggaggtattgaagttgagttaagatatttaatcaggtggtggagatgtggt--gta------tatttatattgacgagga 42635320  T
Q  321 gtatcatgaacactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacc 420  Q
    ||   ||| ||||||||||||||| || || | | ||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||| |||||||    
T  42635321 gtgctatggacactctctttctaatacccacttttttattgggtgaaattcatgtgggtaccacacattgaaaatggattccacataaagtgatgagacc 42635420  T
Q  421 cacatgagttttatccaataggacaatgagtgttagttaaagaaagtgctagaaagagagtcttcataacatttctcttatattgatagcaccatg---- 516  Q
    ||||||||||| |||||||||||| |||||||||||||| ||| ||||              ||  || |||||||||||||||||||||||  ||        
T  42635421 cacatgagtttcatccaataggacgatgagtgttagttagagagagtg--------------tttctagcatttctcttatattgatagcacggtgctct 42635506  T
Q  517 -aatgtgataaagaaacatgtaactagttatgtggacgacatttaagtttgaacatttcaagatcaaaattccaatccttttctaaaaattaaagcattg 615  Q
     ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  42635507 gaatgtgataaagaaacatgtaactaattatgtggacgagatttaagtttgaacatttcaagatcaaaattccaatccttttctagaaattaaagcattg 42635606  T
Q  616 gttatgttgcgggtggacttttactttgacttgtctatagagtaatagtaccttcttcaacacggttgtgttatcaaatgaagatagccacaannnnnnn 715  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  42635607 gttacgttgtgggtggacttttactttgacttgtctatagagtaatagtaccttcttcaacacggttgtgttatcaaatgaagatagccacaattttttt 42635706  T
Q  716 nggggtacaaatgtcacaataactttacttaattgaattatggtatacatgaactaatttgatgctgtaatgcaactaaa-tttttagtataagctaaaa 814  Q
     ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  42635707 tggggtacaaatgtcacaataattttacttaattgaattatggtatacatgaactaatttgatgttgtaatgcaactaaattttttagtataagctaaaa 42635806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 154; E-Value: 4e-81
Query Start/End: Original strand, 26 - 272
Target Start/End: Original strand, 42628917 - 42629159
Alignment:
Q  26 ggcccgcataacaaggaccttgtttgcaccctgtgccacaatatggatcagtgttaccacaatatccatgttcgctacaacataagccttcctcacaccc 125  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||  || |||||||||||| ||||||||||||||    
T  42628917 ggcctgcataacaaggaccttgtttgcaccctgtgccacaatatggatcagtgttaccacagtacccaaattggctacaacataaaccttcctcacaccc 42629016  T
Q  126 acaattttgagcactcgtattttttgaaaccatgatcataataagaaaggttatagcaagttttgctatagacatgcttagtaacttttttcccatcata 225  Q
    |||||||||||||||  || |||||| |||||| |||||||||| ||||| ||||||||||||||||||||||||||||||| | || ||||| ||||||    
T  42629017 acaattttgagcactaatactttttggaaccataatcataataaaaaaggctatagcaagttttgctatagacatgcttagtgatttgtttcctatcata 42629116  T
Q  226 gtgatattatgggtgggaggtattgaagttgagttaagatatttaat 272  Q
    || ||||||    ||||||||||||||||||||||||||||||||||    
T  42629117 gtcatatta----tgggaggtattgaagttgagttaagatatttaat 42629159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 942 - 1079
Target Start/End: Original strand, 42635933 - 42636070
Alignment:
Q  942 acaaaagacaatgacatgagtgaaagaaatgaaaaaacaaatggttagtgatataataatggtaatgatcgtgatagtaaaataaaataaacaattaaca 1041  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42635933 acaaaagacaatgacatgagtgaaagaaatgaaaaaacaaatggttagtgatataataatggtaatgatcgtgatagtaaaataaaataaacaattaaca 42636032  T
Q  1042 gtgagaaatacgtagtttatcaaactttacggttcccg 1079  Q
    ||||||||||||||||||||||||||||||||||||||    
T  42636033 gtgagaaatacgtagtttatcaaactttacggttcccg 42636070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 23 - 236
Target Start/End: Original strand, 42640068 - 42640281
Alignment:
Q  23 tttggcccgcataacaaggaccttgtttgcaccctgtgccacaatatggatcagtgttaccacaatatccatgttcgctacaacataagccttcctcaca 122  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| ||||   ||||||||||| || | || ||| ||||| |  |||||  ||||    
T  42640068 tttggcctgcataacaaggaccttgtttgcaccctgtgccacaatatgcatcaccattaccacaatacccgtattggctgcaacacactccttcagcaca 42640167  T
Q  123 cccacaattttgagcactcgtattttttgaaaccatgatcataataagaaaggttatagcaagttttgctatagacatgcttagtaacttttttcccatc 222  Q
    ||||||||||||||||||   |||||||| ||||||||||||||||| ||||| ||| |||||| |||| ||| | ||||||||| | || |||||||||    
T  42640168 cccacaattttgagcactaacattttttggaaccatgatcataataaaaaaggctatggcaagtgttgccatacatatgcttagtgatttgtttcccatc 42640267  T
Q  223 atagtgatattatg 236  Q
    ||||| ||||||||    
T  42640268 atagtcatattatg 42640281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 344 - 499
Target Start/End: Complemental strand, 5140114 - 5139963
Alignment:
Q  344 acactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaatagga 443  Q
    ||||||| |||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||| | |||||||||    
T  5140114 acactcactctcttattgagtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgaaacccgcatgagtttcacccaatagga 5140015  T
Q  444 caatgagtgttagttaaagaaagtgctagaaagagagtcttcataacatttctctt 499  Q
     | ||||||||||    ||| ||||||||||||||||| ||| || ||||||||||    
T  5140014 gagtgagtgttag----agagagtgctagaaagagagtgttcctagcatttctctt 5139963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 340 - 481
Target Start/End: Complemental strand, 864248 - 864111
Alignment:
Q  340 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaat 439  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| | |||| ||||| || |||| |||||||    
T  864248 tctaacactcactctcttattgggtgaaattcatgtgggtaccacacattagaaatggatcccacataaagcgatgagccccacttgggtttcatccaat 864149  T
Q  440 aggacaatgagtgttagttaaagaaagtgctagaaagagagt 481  Q
    || | ||| ||||||||    ||| |||||||||||||||||    
T  864148 agaaaaataagtgttag----agagagtgctagaaagagagt 864111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 340 - 456
Target Start/End: Original strand, 7709779 - 7709894
Alignment:
Q  340 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaat 439  Q
    ||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| | || ||    
T  7709779 tctaacactcactcttttattgggtgaa-tttatgtgggtaccacacattggaaatagatcccacataaagtggtgagtcccacatgagtttcaccctat 7709877  T
Q  440 aggacaatgagtgttag 456  Q
    |||| | ||||||||||    
T  7709878 aggagagtgagtgttag 7709894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 330 - 431
Target Start/End: Complemental strand, 37285273 - 37285172
Alignment:
Q  330 acactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagt 429  Q
    ||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||| |||||| || ||||||    
T  37285273 acactctctttctaacactcactcttttattgggtgaaattcatgtgggtaccacacattggaaatggatctcacgtaaagtgatgagactcaaatgagt 37285174  T
Q  430 tt 431  Q
    ||    
T  37285173 tt 37285172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 335 - 443
Target Start/End: Original strand, 6951724 - 6951833
Alignment:
Q  335 ctctttctaacactcaatctcttattgggtgaaattt-atgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagtttta 433  Q
    |||||| | ||||| | |||||||||| |||||| || |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |    
T  6951724 ctctttgtgacactaactctcttattgagtgaaaattcatgtgggtgccacacattgaaaatggatcccacataaagtggtgagacccacatgagtttca 6951823  T
Q  434 tccaatagga 443  Q
    ||||||||||    
T  6951824 tccaatagga 6951833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 335 - 453
Target Start/End: Complemental strand, 23403842 - 23403724
Alignment:
Q  335 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 434  Q
    ||||||||||| |||| ||||||| ||||||||||  ||||||||||||||| |||||||||| ||||| |||||| || ||||||||||||||||| |     
T  23403842 ctctttctaaccctcactctcttactgggtgaaatccatgtgggtaccacactttggaaatgggtcccaaataaagcggcgagacccacatgagtttcac 23403743  T
Q  435 ccaataggacaatgagtgt 453  Q
    ||||| ||| | |||||||    
T  23403742 ccaattggagagtgagtgt 23403724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 342 - 443
Target Start/End: Original strand, 8503809 - 8503909
Alignment:
Q  342 taacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaatag 441  Q
    ||||||||| ||| |||||||||||||| ||||||| |||| ||||||  ||||| ||| ||||||||||||||||| |||||||||||| |||||||||    
T  8503809 taacactcactct-ttattgggtgaaatctatgtggataccgcacattaaaaatgaatctcacataaagtggtgagatccacatgagtttcatccaatag 8503907  T
Q  442 ga 443  Q
    ||    
T  8503908 ga 8503909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 358 - 456
Target Start/End: Complemental strand, 9132371 - 9132273
Alignment:
Q  358 attgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaataggacaatgagtgttag 456  Q
    |||||||||||| |||||||||||||| | |||||||| | | ||||||||| ||||||||||||| || |||| | |||||| || | ||||||||||    
T  9132371 attgggtgaaatctatgtgggtaccactctttggaaattggttccacataaaatggtgagacccacttgggtttcacccaataagagagtgagtgttag 9132273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 356 - 498
Target Start/End: Complemental strand, 14960780 - 14960642
Alignment:
Q  356 ttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaataggacaatgagtgtta 455  Q
    ||||||| |||||||||||||| ||| |||||||| ||||||||| |||||||| | |||||||  | |||||||| | ||||||  | || |||| |||    
T  14960780 ttattggatgaaatttatgtggatactacacattgaaaatggatctcacataaaatagtgagacttatatgagtttcacccaataaaaaaacgagtatta 14960681  T
Q  456 gttaaagaaagtgctagaaagagagtcttcataacatttctct 498  Q
    |  ||||||  ||||| |||||| || ||||||||||||||||    
T  14960680 g--aaagaa--tgctaaaaagagggtattcataacatttctct 14960642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 518 - 599
Target Start/End: Original strand, 42629183 - 42629266
Alignment:
Q  518 atgtgataaagaaacatgta--actagttatgtggacgacatttaagtttgaacatttcaagatcaaaattccaatccttttct 599  Q
    ||||||| |||||| |||||  | |||||||||||||||  ||| |||||||||||||||||||| || |||||||||||||||    
T  42629183 atgtgatgaagaaatatgtataattagttatgtggacgaggtttgagtttgaacatttcaagatcgaatttccaatccttttct 42629266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 340 - 431
Target Start/End: Complemental strand, 35714621 - 35714531
Alignment:
Q  340 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttt 431  Q
    |||||||| || |||||| |||| ||||||  ||||||||||||||| |||||||||| || | ||||||||||||||||| ||||| ||||    
T  35714621 tctaacacccactctcttgttggatgaaatccatgtgggtaccacactttggaaatgg-tctcgcataaagtggtgagacctacatgggttt 35714531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 328 - 454
Target Start/End: Complemental strand, 12988166 - 12988040
Alignment:
Q  328 gaacactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatga 427  Q
    |||||| ||||||| |||||||  | ||||||||||  || |  |||||||| | |||| ||||||||   ||||||||||||||||||||||||| ||     
T  12988166 gaacaccctctttccaacactccctgtcttattgggcaaactcaatgtgggtccaacactttggaaataagtcccacataaagtggtgagacccacttgg 12988067  T
Q  428 gttttatccaataggacaatgagtgtt 454  Q
    |||| ||||| | ||| | ||||||||    
T  12988066 gtttaatccagttggagagtgagtgtt 12988040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 340 - 431
Target Start/End: Complemental strand, 27183904 - 27183809
Alignment:
Q  340 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccac----ataaagtggtgagacccacatgagttt 431  Q
    |||||||| || ||||||||| ||||||||  ||||| |||| |||| |||||||||||||  ||    |||||||||||||||| ||||||||||    
T  27183904 tctaacacacattctcttattaggtgaaatccatgtgagtactacacgttggaaatggatcttacatatataaagtggtgagacctacatgagttt 27183809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 340 - 431
Target Start/End: Complemental strand, 27833446 - 27833351
Alignment:
Q  340 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccac----ataaagtggtgagacccacatgagttt 431  Q
    |||||||| || ||||||||| ||||||||  ||||| |||| |||| |||||||||||||  ||    |||||||||||||||| ||||||||||    
T  27833446 tctaacacacattctcttattaggtgaaatccatgtgagtactacacgttggaaatggatcttacatatataaagtggtgagacctacatgagttt 27833351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 328 - 411
Target Start/End: Original strand, 21215341 - 21215422
Alignment:
Q  328 gaacactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagt 411  Q
    |||||||||||||  ||||||||  ||| |||||||| ||||| |||||  | |||||| ||| ||||||||||||||||||||    
T  21215341 gaacactctcttttcaacactca--ctcatattgggtaaaattaatgtgaatcccacactttgaaaatggatcccacataaagt 21215422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 354 - 429
Target Start/End: Complemental strand, 15358780 - 15358705
Alignment:
Q  354 tcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagt 429  Q
    |||||||| |||||||| |||||| ||| ||||  || |||| ||||||||||||| | |||||||||| ||||||    
T  15358780 tcttattgtgtgaaattcatgtggatactacactatgaaaatagatcccacataaaatagtgagacccagatgagt 15358705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 340 - 415
Target Start/End: Complemental strand, 42763849 - 42763774
Alignment:
Q  340 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtg 415  Q
    ||||||||||  ||||||||| ||||||||  |||||| |  ||||| |||||||||| || ||||||||||||||    
T  42763849 tctaacactcgttctcttattaggtgaaatcaatgtggttctcacactttggaaatgggtctcacataaagtggtg 42763774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 422
Target Start/End: Complemental strand, 21447254 - 21447172
Alignment:
Q  340 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagaccca 422  Q
    |||||||| || ||| |||||| |||||||  ||||||||   |||| |||||||||| ||||||||||| ||||| ||||||    
T  21447254 tctaacacccactcttttattgtgtgaaatcaatgtgggtcttacactttggaaatgggtcccacataaaatggtgggaccca 21447172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 335 - 368
Target Start/End: Original strand, 9132267 - 9132300
Alignment:
Q  335 ctctttctaacactcaatctcttattgggtgaaa 368  Q
    |||||||||||||||| |||||||||||||||||    
T  9132267 ctctttctaacactcactctcttattgggtgaaa 9132300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 1e-44; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 330 - 499
Target Start/End: Complemental strand, 37306564 - 37306399
Alignment:
Q  330 acactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagt 429  Q
    ||||| ||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  37306564 acactttctttctaacactcactttcttattgggtgaaattcatgtgggtaccacacattggaaatggatctcacataaagtggtgagacccacatgagt 37306465  T
Q  430 tttatccaataggacaatgagtgttagttaaagaaagtgctagaaagagagtcttcataacatttctctt 499  Q
    || | ||||||  | | ||||||||||    ||| ||||||||||||||||| ||| || ||||||||||    
T  37306464 ttcacccaatataagagtgagtgttag----agagagtgctagaaagagagtgttcctagcatttctctt 37306399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 343 - 497
Target Start/End: Complemental strand, 31699624 - 31699474
Alignment:
Q  343 aacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaatagg 442  Q
    |||||||| ||||||||||||||||||| ||||||||| || |||||||||||||| |||||||||| |||||||||||||||| |||| ||||||||||    
T  31699624 aacactcactctcttattgggtgaaattcatgtgggtatcatacattggaaatggaccccacataaaatggtgagacccacatgtgtttaatccaatagg 31699525  T
Q  443 acaatgagtgttagttaaagaaagtgctagaaagagagtcttcataacatttctc 497  Q
    | | ||||||||||    ||| ||||||||||||||||| ||| || ||||||||    
T  31699524 agagtgagtgttag----agagagtgctagaaagagagtgttcttagcatttctc 31699474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 329 - 499
Target Start/End: Original strand, 43480264 - 43480430
Alignment:
Q  329 aacactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgag 428  Q
    ||||| |||| ||||||||||| | ||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  43480264 aacaccctctctctaacactcactttcttattggctgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacatgag 43480363  T
Q  429 ttttatccaataggacaatgagtgttagttaaagaaagtgctagaaagagagtcttcataacatttctctt 499  Q
    ||| | ||||||||| | ||| || |||     || ||||||||||||||||| ||| || ||||||||||    
T  43480364 tttcacccaataggagagtgactgctag----ggagagtgctagaaagagagtgttcctagcatttctctt 43480430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 4e-35
Query Start/End: Original strand, 340 - 497
Target Start/End: Complemental strand, 51475312 - 51475159
Alignment:
Q  340 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaat 439  Q
    |||||||| || ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| | |||||    
T  51475312 tctaacacccactctcttattgggtgaaatccatgtgggtaccacacattggaaatggatcccacataaagtggtgagatccacatgggtttcacccaat 51475213  T
Q  440 aggacaatgagtgttagttaaagaaagtgctagaaagagagtcttcataacatttctc 497  Q
    | ||   ||||||||||    ||| ||||||||||||||||| ||| || ||||||||    
T  51475212 aagagggtgagtgttag----agagagtgctagaaagagagtgttcctagcatttctc 51475159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 326 - 431
Target Start/End: Complemental strand, 50251615 - 50251510
Alignment:
Q  326 atgaacactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacat 425  Q
    ||||||||||||||||||||||||| | | ||||||||||||||| |||||| |||||||| ||| ||||||||||||| |||| ||||||||| |||||    
T  50251615 atgaacactctctttctaacactcacttttttattgggtgaaattcatgtggataccacacgttgaaaatggatcccacgtaaaatggtgagactcacat 50251516  T
Q  426 gagttt 431  Q
    ||||||    
T  50251515 gagttt 50251510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 335 - 500
Target Start/End: Original strand, 6540251 - 6540412
Alignment:
Q  335 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 434  Q
    |||||| |||||  || ||||||||||||||||||  |||||| || || ||||||||||||||||| ||| |||||||||||| |||||| ||||| |     
T  6540251 ctctttgtaacatccactctcttattgggtgaaatcaatgtggttatcatacattggaaatggatcctacacaaagtggtgagatccacataagtttcac 6540350  T
Q  435 ccaataggacaatgagtgttagttaaagaaagtgctagaaagagagtcttcataacatttctctta 500  Q
    ||||||||| ||||||||||||    ||| |||| |||||||||||| ||| || |||||||||||    
T  6540351 ccaataggagaatgagtgttag----agagagtgatagaaagagagtgttcctaccatttctctta 6540412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 335 - 454
Target Start/End: Original strand, 30111795 - 30111913
Alignment:
Q  335 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 434  Q
    |||| ||||||||||| | ||||||||| ||||| | |||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||| |     
T  30111795 ctctctctaacactcactttcttattggatgaaagtcatgtgggtaccacacattgg-aattgatcccacataaagtggtgagatccacatgagtttcac 30111893  T
Q  435 ccaataggacaatgagtgtt 454  Q
    |||||| || | ||||||||    
T  30111894 ccaatatgagagtgagtgtt 30111913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 380 - 437
Target Start/End: Original strand, 51823131 - 51823188
Alignment:
Q  380 accacacattggaaatggatcccacataaagtggtgagacccacatgagttttatcca 437  Q
    ||||||||||  ||||||||| |||||||||||||||||||||||||||||| |||||    
T  51823131 accacacattaaaaatggatcgcacataaagtggtgagacccacatgagtttcatcca 51823188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 382 - 455
Target Start/End: Original strand, 5994940 - 5995013
Alignment:
Q  382 cacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaataggacaatgagtgtta 455  Q
    |||||||||||||||| | |||| |||||||||||| |  |||| |||||||||||||| || |||||||||||    
T  5994940 cacacattggaaatgggttccacttaaagtggtgagtcatacattagttttatccaataagagaatgagtgtta 5995013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 356 - 422
Target Start/End: Complemental strand, 16650587 - 16650521
Alignment:
Q  356 ttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagaccca 422  Q
    ||||||| ||||||||||||||| |||| |||| | |||||||||||||||||  ||| ||||||||    
T  16650587 ttattggatgaaatttatgtgggcaccaaacatcgaaaatggatcccacataagttggcgagaccca 16650521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 382 - 456
Target Start/End: Complemental strand, 27654585 - 27654511
Alignment:
Q  382 cacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaataggacaatgagtgttag 456  Q
    ||||| |||||||||| | |||| |||||||||| |||  |||| |||||||||||||| || ||||||||||||    
T  27654585 cacacgttggaaatgggttccacttaaagtggtgggacatacattagttttatccaataagagaatgagtgttag 27654511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 388 - 440
Target Start/End: Original strand, 27362638 - 27362690
Alignment:
Q  388 ttggaaatggatcccacataaagtggtgagacccacatgagttttatccaata 440  Q
    ||||||||||||| ||| ||||||||||||| |||||||||||| || |||||    
T  27362638 ttggaaatggatctcacgtaaagtggtgagatccacatgagtttcattcaata 27362690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 356 - 431
Target Start/End: Complemental strand, 21710652 - 21710578
Alignment:
Q  356 ttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttt 431  Q
    ||||| ||||||||||||||||||| |||| |||| |||| || | ||||||||||| | |||| |||||||||||    
T  21710652 ttatttggtgaaatttatgtgggtatcacaaattgaaaataga-ctcacataaagtgataagactcacatgagttt 21710578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 340 - 427
Target Start/End: Original strand, 26369048 - 26369135
Alignment:
Q  340 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatga 427  Q
    |||| |||||| ||||||||| ||||||| |  |||||||  ||| | || |||||| | ||||||||||||| ||||||||||||||    
T  26369048 tctagcactcactctcttattcggtgaaactcgtgtgggtctcacgctttagaaatgaaacccacataaagtgatgagacccacatga 26369135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 422
Target Start/End: Original strand, 49738954 - 49739036
Alignment:
Q  340 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagaccca 422  Q
    ||||||||||| ||| ||||| ||||||||  ||||||||   |||| |||||||| | |||||||||| |||||| ||||||    
T  49738954 tctaacactcactcttttatttggtgaaatccatgtgggtcatacactttggaaattggtcccacataatgtggtgggaccca 49739036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 375 - 420
Target Start/End: Original strand, 27789954 - 27789999
Alignment:
Q  375 tgggtaccacacattggaaatggatcccacataaagtggtgagacc 420  Q
    ||||||||||  |||| |||||||| ||||||||||||||||||||    
T  27789954 tgggtaccaccaattgtaaatggataccacataaagtggtgagacc 27789999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 2e-42; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 334 - 499
Target Start/End: Original strand, 6580856 - 6581016
Alignment:
Q  334 tctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagtttta 433  Q
    ||||||||||||| |||  |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |    
T  6580856 tctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattggaaat-gatcccacataaagtggtgagacccacatgagtttca 6580954  T
Q  434 tccaataggacaatgagtgttagttaaagaaagtgctagaaagagagtcttcataacatttctctt 499  Q
     ||||||| |   ||||||||||    ||| ||||||||||||||||| ||| |||||||||||||    
T  6580955 cccaatagaagggtgagtgttag----agagagtgctagaaagagagtgttcttaacatttctctt 6581016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 335 - 456
Target Start/End: Complemental strand, 33440657 - 33440536
Alignment:
Q  335 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 434  Q
    |||| ||||||| ||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  33440657 ctctctctaacattcactctcttattgggtgaaagtcatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagtttcac 33440558  T
Q  435 ccaataggacaatgagtgttag 456  Q
    | ||||||| | ||||||||||    
T  33440557 ctaataggagagtgagtgttag 33440536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 335 - 498
Target Start/End: Original strand, 28700581 - 28700740
Alignment:
Q  335 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 434  Q
    |||| ||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||| |     
T  28700581 ctctctctaacactcactctcttattgggttaaatttatgtgggtaccacatattggaaatgaatcccacataaagtggtgagactcacatgagtttcac 28700680  T
Q  435 ccaataggacaatgagtgttagttaaagaaagtgctagaaagagagtcttcataacatttctct 498  Q
     |||||| | | |||||    ||||||||  ||| |||||||| ||| |||||| |||||||||    
T  28700681 tcaatagaagagtgagt----gttaaagagtgtgatagaaagaaagtgttcatagcatttctct 28700740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 326 - 443
Target Start/End: Complemental strand, 45058071 - 45057954
Alignment:
Q  326 atgaacactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacat 425  Q
    ||||||||| ||| ||||||||||| ||||||||||| ||||| ||||||| ||  ||||| |||||||||||||||||||||||||  |||||||||||    
T  45058071 atgaacactttctctctaacactcactctcttattggttgaaacttatgtgagtctcacactttggaaatggatcccacataaagtgacgagacccacat 45057972  T
Q  426 gagttttatccaatagga 443  Q
     ||||| | |||||||||    
T  45057971 aagtttcacccaatagga 45057954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 335 - 440
Target Start/End: Complemental strand, 30085531 - 30085426
Alignment:
Q  335 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 434  Q
    |||| ||||||||| | |||||||||| |||||||| ||||| ||  ||||  ||||||||||||||||||||||||||||||| |||||||||||| |     
T  30085531 ctctctctaacacttactctcttattgagtgaaattcatgtgagtgtcacatgttggaaatggatcccacataaagtggtgagatccacatgagtttcac 30085432  T
Q  435 ccaata 440  Q
    ||||||    
T  30085431 ccaata 30085426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 335 - 456
Target Start/End: Complemental strand, 1311593 - 1311472
Alignment:
Q  335 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 434  Q
    ||||||||||||||||   ||||||| ||||| ||  ||||||||  ||||| |||||||||||||||||||||| ||||||||||| |||| |||| |     
T  1311593 ctctttctaacactcacattcttatttggtgagatccatgtgggtttcacactttggaaatggatcccacataaaatggtgagacccgcatgggtttcac 1311494  T
Q  435 ccaataggacaatgagtgttag 456  Q
    |||||| || || |||||||||    
T  1311493 ccaataagagaaggagtgttag 1311472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 352 - 431
Target Start/End: Original strand, 33133475 - 33133554
Alignment:
Q  352 tctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttt 431  Q
    ||||||||||| ||||||| ||||  ||||||||| |||||||||| ||| ||||||||||||||| |||||||||||||    
T  33133475 tctcttattggatgaaattcatgtaagtaccacactttggaaatgggtccgacataaagtggtgaggcccacatgagttt 33133554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 336 - 426
Target Start/End: Complemental strand, 35188506 - 35188416
Alignment:
Q  336 tctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatg 426  Q
    ||||||||||||||| |||||||| |||||||||| ||||||||  ||||| |||||||| | |||||| |||||||||| || |||||||    
T  35188506 tctttctaacactcactctcttatagggtgaaattaatgtgggtctcacactttggaaataggtcccacgtaaagtggtgggatccacatg 35188416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 340 - 433
Target Start/End: Original strand, 12212155 - 12212248
Alignment:
Q  340 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagtttta 433  Q
    ||||||| ||| ||| || |||||||||||  |||||||| | |||| |||||||||| |||||||||||||||||||| ||| |||| |||||    
T  12212155 tctaacattcactcttttcttgggtgaaatcaatgtgggtcctacactttggaaatgggtcccacataaagtggtgagatccatatgaatttta 12212248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 340 - 433
Target Start/End: Original strand, 12456583 - 12456676
Alignment:
Q  340 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagtttta 433  Q
    ||||||| ||| ||| || |||||||||||  |||||||| | |||| |||||||||| |||||||||||||||||||| ||| |||| |||||    
T  12456583 tctaacattcactcttttcttgggtgaaatcaatgtgggtcctacactttggaaatgggtcccacataaagtggtgagatccatatgaatttta 12456676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 400 - 481
Target Start/End: Original strand, 16896336 - 16896413
Alignment:
Q  400 cccacataaagtggtgagacccacatgagttttatccaataggacaatgagtgttagttaaagaaagtgctagaaagagagt 481  Q
    |||||||||||||||||||||||||||||||| | | ||||| | ||||||||||||    ||| |||||||||||||||||    
T  16896336 cccacataaagtggtgagacccacatgagtttcaccaaatagaaaaatgagtgttag----agagagtgctagaaagagagt 16896413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 343 - 437
Target Start/End: Original strand, 14022030 - 14022124
Alignment:
Q  343 aacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatcca 437  Q
    |||| ||| ||||||||| ||||||||| |||| ||| ||| || ||||||| |||||||||||||| ||| |||||||||| || ||| |||||    
T  14022030 aacattcactctcttattcggtgaaattaatgtaggtcccaaactttggaaacggatcccacataaactggcgagacccacacgaatttcatcca 14022124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 347 - 440
Target Start/End: Original strand, 13990490 - 13990583
Alignment:
Q  347 ctcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaata 440  Q
    |||| ||||||||| ||||||| |||||| ||  |||||  ||| |||| | ||| ||||||||||||||||||||||||||||| | ||||||    
T  13990490 ctcattctcttatttggtgaaacttatgtaggatccacaatttgaaaataggtcctacataaagtggtgagacccacatgagtttcacccaata 13990583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 356 - 416
Target Start/End: Complemental strand, 31703882 - 31703822
Alignment:
Q  356 ttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtga 416  Q
    ||||||| | ||||| |||||| || ||||| |||||||||||||||||||||||||||||    
T  31703882 ttattggttaaaattaatgtggatatcacactttggaaatggatcccacataaagtggtga 31703822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 340 - 440
Target Start/End: Original strand, 34434946 - 34435046
Alignment:
Q  340 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaat 439  Q
    ||||||| ||| ||||||||||| |||||  |||| | || |||||| ||||||||| |||||| |||||| ||||||| ||||||| |||| | |||||    
T  34434946 tctaacattcactctcttattggatgaaacctatgcgagtcccacaccttggaaatgcatcccatataaagcggtgagatccacatgggtttcacccaat 34435045  T
Q  440 a 440  Q
    |    
T  34435046 a 34435046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 392 - 431
Target Start/End: Original strand, 31024183 - 31024222
Alignment:
Q  392 aaatggatcccacataaagtggtgagacccacatgagttt 431  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  31024183 aaatgaatcccacataaagtggtgagacccacatgagttt 31024222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 329 - 412
Target Start/End: Original strand, 38695671 - 38695754
Alignment:
Q  329 aacactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtg 412  Q
    |||||||||||| ||||||||| ||||||||||| ||||||| |||||| |  || || || |||||||||||| ||| |||||    
T  38695671 aacactctctttataacactcactctcttattggatgaaattaatgtggatctcatactttagaaatggatcccgcatgaagtg 38695754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 356 - 426
Target Start/End: Original strand, 902419 - 902489
Alignment:
Q  356 ttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatg 426  Q
    ||||||||||||||  |||||| | | || | |||||||||| ||||||||||||||||| ||||||||||    
T  902419 ttattgggtgaaatcaatgtggatcctacgctttggaaatgggtcccacataaagtggtgggacccacatg 902489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 335 - 425
Target Start/End: Original strand, 16441832 - 16441922
Alignment:
Q  335 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacat 425  Q
    |||| ||||||||||| ||| |||||| ||||||| ||||| ||| ||| |  | ||||||||||||||||||| ||| || |||||||||    
T  16441832 ctctctctaacactcactcttttattgagtgaaatctatgtaggttccaaaattcggaaatggatcccacataaggtgatgggacccacat 16441922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 352 - 435
Target Start/End: Complemental strand, 4480369 - 4480286
Alignment:
Q  352 tctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatc 435  Q
    ||||||||| | |||||| ||  ||| |||||||| ||  ||||| ||||||| |||||||||||||| ||||||| |||||||    
T  4480369 tctcttattagatgaaatctacatggataccacactttaaaaatgaatcccacttaaagtggtgagacacacatgaattttatc 4480286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 405 - 440
Target Start/End: Complemental strand, 34172542 - 34172507
Alignment:
Q  405 ataaagtggtgagacccacatgagttttatccaata 440  Q
    ||||||||||||||| ||||||||||||||||||||    
T  34172542 ataaagtggtgagactcacatgagttttatccaata 34172507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 335 - 440
Target Start/End: Complemental strand, 6387716 - 6387611
Alignment:
Q  335 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 434  Q
    |||| ||||||||||| ||||||||||||| |||   ||||||||   | || ||||||||||| |||||||||| ||||| |||  ||||   ||||||    
T  6387716 ctctctctaacactcattctcttattgggttaaaacaatgtgggtcgtatactttggaaatggaacccacataaaatggtgggacatacattgattttat 6387617  T
Q  435 ccaata 440  Q
    ||||||    
T  6387616 ccaata 6387611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 329 - 426
Target Start/End: Original strand, 35494150 - 35494246
Alignment:
Q  329 aacactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatg 426  Q
    ||||||||||||| |||||||| |||| |||||| | ||||  ||||| ||  ||||| || ||||||| ||||||||||| ||||| ||| ||||||    
T  35494150 aacactctctttccaacactcactctcctattggataaaatcgatgtgagtctcacac-tttgaaatgggtcccacataaaatggtgggacacacatg 35494246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 2e-40; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 335 - 497
Target Start/End: Original strand, 24886065 - 24886223
Alignment:
Q  335 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 434  Q
    |||| ||||||||||| ||| ||||||||||||||| ||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||| |     
T  24886065 ctctctctaacactcactcttttattgggtgaaattcatgtgggtaccacacattgtaaatagatcccacataaagcggtgagacccacatgagtttcac 24886164  T
Q  435 ccaataggacaatgagtgttagttaaagaaagtgctagaaagagagtcttcataacatttctc 497  Q
    ||||||||| | ||||||||||    ||| ||||||||||||||||| ||| || ||||||||    
T  24886165 ccaataggagagtgagtgttag----agagagtgctagaaagagagtgttcttagcatttctc 24886223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 335 - 455
Target Start/End: Original strand, 19078939 - 19079059
Alignment:
Q  335 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 434  Q
    |||| ||||||||||| ||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  19078939 ctctctctaacactcactctcttattgggtgaaagtcatgcgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagtttcac 19079038  T
Q  435 ccaataggacaatgagtgtta 455  Q
    ||||||||| | |||||||||    
T  19079039 ccaataggagagtgagtgtta 19079059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 335 - 455
Target Start/End: Original strand, 19126827 - 19126947
Alignment:
Q  335 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 434  Q
    |||| ||||||||||| ||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  19126827 ctctctctaacactcactctcttattgggtgaaagtcatgcgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagtttcac 19126926  T
Q  435 ccaataggacaatgagtgtta 455  Q
    ||||||||| | |||||||||    
T  19126927 ccaataggagagtgagtgtta 19126947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 340 - 497
Target Start/End: Original strand, 29068111 - 29068264
Alignment:
Q  340 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaat 439  Q
    ||||||||||| | | ||||||||||||||   ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||    
T  29068111 tctaacactcactattttattgggtgaaatacgtgtgggtaccacacattggaaattgatcccacataaaatggtgagacccacatgagtttcatccaat 29068210  T
Q  440 aggacaatgagtgttagttaaagaaagtgctagaaagagagtcttcataacatttctc 497  Q
    |||| | ||||||||||    ||| ||||||||||||||||| ||| || ||||||||    
T  29068211 aggagagtgagtgttag----agagagtgctagaaagagagtgttcctagcatttctc 29068264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 335 - 443
Target Start/End: Original strand, 932007 - 932115
Alignment:
Q  335 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 434  Q
    |||||| ||||||||  ||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||     
T  932007 ctctttgtaacactcgctctctaattgggtgaaattcatgtggataccacacattggaaatggatcccacataaagtggtgagacccacgtaagttttac 932106  T
Q  435 ccaatagga 443  Q
    | |||||||    
T  932107 caaatagga 932115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 335 - 455
Target Start/End: Original strand, 31602087 - 31602207
Alignment:
Q  335 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 434  Q
    |||| ||||||||||| ||||||||||| ||||| | ||||||||  ||||| ||||||||||||||||| ||||||||||||||||||||| |||| ||    
T  31602087 ctctctctaacactcattctcttattggatgaaactcatgtgggtctcacactttggaaatggatcccacctaaagtggtgagacccacatgtgtttcat 31602186  T
Q  435 ccaataggacaatgagtgtta 455  Q
    |||||| || | |||||||||    
T  31602187 ccaataagagagtgagtgtta 31602207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 340 - 455
Target Start/End: Complemental strand, 14562680 - 14562565
Alignment:
Q  340 tctaacactcaa-tctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaa 438  Q
    |||||||||||| |||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| | | ||| |||||| || |||    
T  14562680 tctaacactcaactctcttattgagtgaaatttatgtaggtaccacactttggaaatggatcccacataaagtggtgaca-ctacaagagtttcattcaa 14562582  T
Q  439 taggacaatgagtgtta 455  Q
    ||||| | |||||||||    
T  14562581 taggagagtgagtgtta 14562565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 335 - 410
Target Start/End: Complemental strand, 11709731 - 11709656
Alignment:
Q  335 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaag 410  Q
    |||| ||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  11709731 ctctctctaacactcactctcttattgagtgaaattcatgtgggtaccacacattggaaatggatcccacataaag 11709656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 352 - 456
Target Start/End: Original strand, 16173053 - 16173156
Alignment:
Q  352 tctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaataggacaatgagt 451  Q
    ||||||||||||||||||  |||||| |||| ||||||||||||| |||||||||| || ||||||| ||||||| |||| | ||||||||| | |||||    
T  16173053 tctcttattgggtgaaatccatgtgg-taccccacattggaaatgaatcccacatatagaggtgagatccacatgggtttcacccaataggagagtgagt 16173151  T
Q  452 gttag 456  Q
    |||||    
T  16173152 gttag 16173156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 352 - 417
Target Start/End: Complemental strand, 52444512 - 52444448
Alignment:
Q  352 tctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgag 417  Q
    |||||||||||||||| | |||||||||||||||| || ||||||||||||||| |||||||||||    
T  52444512 tctcttattgggtgaa-tctatgtgggtaccacactttcgaaatggatcccacagaaagtggtgag 52444448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 340 - 427
Target Start/End: Complemental strand, 43275925 - 43275838
Alignment:
Q  340 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatga 427  Q
    |||||||| || ||| |||||||||| |||  |||||||||||| |  || ||||||||||||||||||| | |||||||||||||||    
T  43275925 tctaacacacactcttttattgggtggaatccatgtgggtaccagattttcgaaatggatcccacataaaatcgtgagacccacatga 43275838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 344 - 455
Target Start/End: Original strand, 17642388 - 17642497
Alignment:
Q  344 acactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaatagga 443  Q
    ||||||| | ||||||| | ||||||  |||||||||||||||||| ||||||||||  |||||||||| |||||  || || ||||| ||||||||| |    
T  17642388 acactcattttcttattagctgaaatacatgtgggtaccacacattagaaatggatcatacataaagtgatgaga--catataagtttcatccaatagta 17642485  T
Q  444 caatgagtgtta 455  Q
     | |||||||||    
T  17642486 gagtgagtgtta 17642497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 338 - 456
Target Start/End: Complemental strand, 8050121 - 8050003
Alignment:
Q  338 tttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatcca 437  Q
    |||| |||| ||| ||||||||| ||||||||  || ||| ||||||||||  || |||||||| | |||||||||||||||||| |||| ||| |||      
T  8050121 tttcgaacattcactctcttattaggtgaaatcaatatggataccacacatgagacatggatccgatataaagtggtgagacccaaatgaatttcatcat 8050022  T
Q  438 ataggacaatgagtgttag 456  Q
    |||| | ||||||| ||||    
T  8050021 atagaaaaatgagtattag 8050003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 335 - 415
Target Start/End: Complemental strand, 11135894 - 11135814
Alignment:
Q  335 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtg 415  Q
    |||| |||| |||||| ||| ||||||||||||||  |||| ||  | |||| ||||||||||| ||||||||||||||||    
T  11135894 ctctctctagcactcactcttttattgggtgaaatcaatgtaggacctacactttggaaatggaacccacataaagtggtg 11135814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 328 - 379
Target Start/End: Complemental strand, 19079073 - 19079022
Alignment:
Q  328 gaacactctctttctaacactcaatctcttattgggtgaaatttatgtgggt 379  Q
    ||||||||||||| ||||||||| |||| |||||||||||| | ||||||||    
T  19079073 gaacactctctttttaacactcactctcctattgggtgaaactcatgtgggt 19079022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 328 - 379
Target Start/End: Complemental strand, 19126961 - 19126910
Alignment:
Q  328 gaacactctctttctaacactcaatctcttattgggtgaaatttatgtgggt 379  Q
    ||||||||||||| ||||||||| |||| |||||||||||| | ||||||||    
T  19126961 gaacactctctttttaacactcactctcctattgggtgaaactcatgtgggt 19126910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 390 - 433
Target Start/End: Original strand, 24733928 - 24733971
Alignment:
Q  390 ggaaatggatcccacataaagtggtgagacccacatgagtttta 433  Q
    |||||||||||| |||||||||||||||| ||||||| ||||||    
T  24733928 ggaaatggatccaacataaagtggtgagatccacatgggtttta 24733971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 413 - 456
Target Start/End: Complemental strand, 31602136 - 31602093
Alignment:
Q  413 gtgagacccacatgagttttatccaataggacaatgagtgttag 456  Q
    ||||||||||||||||||| |||||||| || ||||||||||||    
T  31602136 gtgagacccacatgagtttcatccaataagagaatgagtgttag 31602093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 388 - 433
Target Start/End: Original strand, 24733817 - 24733862
Alignment:
Q  388 ttggaaatggatcccacataaagtggtgagacccacatgagtttta 433  Q
    |||||||||||||| |||||||||||||||| | ||||| ||||||    
T  24733817 ttggaaatggatccaacataaagtggtgagatcgacatgggtttta 24733862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 2e-39; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 335 - 499
Target Start/End: Original strand, 30892135 - 30892295
Alignment:
Q  335 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 434  Q
    |||||||||||||||| ||||||||| |||||| || |||||||||||||||||| ||||||||||||||||||| ||||||||| || |||||||| |     
T  30892135 ctctttctaacactcactctcttattcggtgaagttcatgtgggtaccacacattagaaatggatcccacataaaatggtgagactcatatgagtttcac 30892234  T
Q  435 ccaataggacaatgagtgttagttaaagaaagtgctagaaagagagtcttcataacatttctctt 499  Q
    ||||||||| | ||||||||||    ||| ||||||||||||||||| ||| || ||||||||||    
T  30892235 ccaataggagagtgagtgttag----agagagtgctagaaagagagtgttcctagcatttctctt 30892295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 330 - 497
Target Start/End: Complemental strand, 17190769 - 17190604
Alignment:
Q  330 acactctctttctaacactcaat--ctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatga 427  Q
    ||||| ||||||||||||||  |  ||||| |||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |    
T  17190769 acactttctttctaacactctctttctcttgttgggtgaaattcatgcgggtaccacacattagaaatggatcccacataaagtggtgagacccacataa 17190670  T
Q  428 gttttatccaataggacaatgagtgttagttaaagaaagtgctagaaagagagtcttcataacatttctc 497  Q
    |||| | | ||||||| | ||||||||||    ||| ||||||||||||||||| |||||| ||||||||    
T  17190669 gtttcacctaataggaaagtgagtgttag----agagagtgctagaaagagagtgttcatagcatttctc 17190604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 330 - 456
Target Start/End: Complemental strand, 18237294 - 18237168
Alignment:
Q  330 acactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagt 429  Q
    ||||||||||||||||||||| ||| ||||||||||||||| ||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||| |    
T  18237294 acactctctttctaacactcactcttttattgggtgaaattcatgtgggtatcacacattgaaaatagatcccacataaagtggtgagacccacatgaat 18237195  T
Q  430 tttatccaataggacaatgagtgttag 456  Q
    || | |||| ||||   ||||||||||    
T  18237194 ttcacccaagaggaaggtgagtgttag 18237168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 335 - 497
Target Start/End: Original strand, 42958466 - 42958624
Alignment:
Q  335 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 434  Q
    |||| ||||||| ||| | | ||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||    
T  42958466 ctctctctaacagtcacttttttatttggtgaaattcatgtgggtaccacgcattggaaatggatcccacataaagtggtgagacccgcatgagtttcat 42958565  T
Q  435 ccaataggacaatgagtgttagttaaagaaagtgctagaaagagagtcttcataacatttctc 497  Q
    ||||||| | | ||||||||||    ||  ||||||||||||||||| ||| || ||||||||    
T  42958566 ccaatagaaaagtgagtgttag----agtgagtgctagaaagagagtgttcctagcatttctc 42958624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 343 - 498
Target Start/End: Complemental strand, 5990664 - 5990513
Alignment:
Q  343 aacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaatagg 442  Q
    |||||||| ||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||  ||| |||||||| |    
T  5990664 aacactcactcttttattgggtgaaattcatgtgggtaccatacattggaaatggatcccacataaaatggtgagacccacatgtatttaatccaatatg 5990565  T
Q  443 acaatgagtgttagttaaagaaagtgctagaaagagagtcttcataacatttctct 498  Q
    | | ||||||||||    ||| ||||||| ||||||||  ||| || |||||||||    
T  5990564 agagtgagtgttag----agagagtgctaaaaagagagcgttcttagcatttctct 5990513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 331 - 440
Target Start/End: Complemental strand, 32153850 - 32153741
Alignment:
Q  331 cactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagtt 430  Q
    |||||||||||||||||||| |||||||||||||||||   |||||| | |||||| |||||||||||||||||||||||||||||||||||||||  ||    
T  32153850 cactctctttctaacactcactctcttattgggtgaaacccatgtggatcccacactttggaaatggatcccacataaagtggtgagacccacatggatt 32153751  T
Q  431 ttatccaata 440  Q
    |||| |||||    
T  32153750 ttattcaata 32153741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 340 - 426
Target Start/End: Complemental strand, 41020326 - 41020240
Alignment:
Q  340 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatg 426  Q
    |||||||| || |||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  41020326 tctaacacccactctcttattgggtgaaatatatgtgggtaccacatattggaaatgaatcccacataaagtggtgagacccacatg 41020240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 326 - 426
Target Start/End: Complemental strand, 34321022 - 34320922
Alignment:
Q  326 atgaacactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacat 425  Q
    ||||||||||||||| ||||||||| |||||| |||||||||||  |||||| ||||| || ||| |||| ||||||||||||||||||||||| |||||    
T  34321022 atgaacactctctttttaacactcattctcttgttgggtgaaatccatgtggataccatactttgaaaatagatcccacataaagtggtgagactcacat 34320923  T
Q  426 g 426  Q
    |    
T  34320922 g 34320922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 335 - 431
Target Start/End: Complemental strand, 28436556 - 28436460
Alignment:
Q  335 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttt 431  Q
    |||||||||||| ||| ||||| ||||||||||||| |||||| |||||||| || ||||||||| ||  |||||||||||||| | ||| ||||||    
T  28436556 ctctttctaacattcactctctaattgggtgaaattcatgtggttaccacacttttgaaatggattccgtataaagtggtgagatctacacgagttt 28436460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 330 - 417
Target Start/End: Complemental strand, 10393878 - 10393791
Alignment:
Q  330 acactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgag 417  Q
    ||||||| |||||||||||   | ||||||||||||||||| |||||||||| |||||||| ||||  |||||||||||||| |||||    
T  10393878 acactctatttctaacacttgctttcttattgggtgaaattcatgtgggtactacacattgaaaataaatcccacataaagtagtgag 10393791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 330 - 414
Target Start/End: Original strand, 27726818 - 27726902
Alignment:
Q  330 acactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggt 414  Q
    ||||||||||||  ||||||| ||| ||||||||||||||| |||||||| | |||| |||||||||| ||||||  ||||||||    
T  27726818 acactctctttcctacactcactcttttattgggtgaaattaatgtgggtcctacactttggaaatgggtcccactcaaagtggt 27726902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 352 - 443
Target Start/End: Original strand, 2976559 - 2976650
Alignment:
Q  352 tctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaatagga 443  Q
    ||||||||||||| ||||| |||||| ||| | ||||||||||| ||||  | ||||| | || ||||||||||| ||||||||||||||||    
T  2976559 tctcttattgggtaaaattcatgtggatactatacattggaaattgatctaatataaaattgtaagacccacatgggttttatccaatagga 2976650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 346 - 456
Target Start/End: Complemental strand, 40699622 - 40699511
Alignment:
Q  346 actcaatctcttattggg-tgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaataggac 444  Q
    ||||| |||||||||||| |||||   ||||||||  || || |||||||||||||||| ||||||| |||||||||||||| |||| | |||||| ||     
T  40699622 actcagtctcttattggggtgaaacccatgtgggtctcatactttggaaatggatcccaaataaagtagtgagacccacatgggtttcacccaataagaa 40699523  T
Q  445 aatgagtgttag 456  Q
    | ||||||||||    
T  40699522 agtgagtgttag 40699511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 354 - 456
Target Start/End: Original strand, 26435319 - 26435420
Alignment:
Q  354 tcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaataggacaatgagtgt 453  Q
    ||||||||| ||||||| ||||||| ||| ||| |||||||  | || |||||||||||||||||||||| | | ||| | ||||||||| | |||||||    
T  26435319 tcttattggatgaaattcatgtgggcaccgcactttggaaagag-tctcacataaagtggtgagacccacgtaaatttcacccaataggagagtgagtgt 26435417  T
Q  454 tag 456  Q
    |||    
T  26435418 tag 26435420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 329 - 379
Target Start/End: Complemental strand, 26435432 - 26435382
Alignment:
Q  329 aacactctctttctaacactcaatctcttattgggtgaaatttatgtgggt 379  Q
    |||||||| ||||||||||||| |||| |||||||||||||||| ||||||    
T  26435432 aacactctttttctaacactcactctcctattgggtgaaatttacgtgggt 26435382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 409
Target Start/End: Original strand, 16875283 - 16875364
Alignment:
Q  328 gaacactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaa 409  Q
    |||||||||||||| | ||||||| |||||||||||| ||||| ||| |||| |||| | |||||  ||| |||||||||||    
T  16875283 gaacactctctttccagcactcaacctcttattgggtaaaattaatgcgggtcccactctttggacgtgggtcccacataaa 16875364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 343 - 411
Target Start/End: Original strand, 2406004 - 2406072
Alignment:
Q  343 aacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagt 411  Q
    |||||||| ||| |||||||||||||| ||||||||| |||||| ||| | ||||  ||||||||||||    
T  2406004 aacactcattcttttattgggtgaaatctatgtgggttccacactttgaagatggcacccacataaagt 2406072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 352 - 440
Target Start/End: Original strand, 34457661 - 34457748
Alignment:
Q  352 tctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaata 440  Q
    |||||| ||| || ||||||||||||||| | ||  ||  |||||||||||||||||||| |||||| |||| | ||||||||||||||    
T  34457661 tctcttgttgagtaaaatttatgtgggtatcgcattttaaaaatggatcccacataaagttgtgagatccacct-agttttatccaata 34457748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 328 - 368
Target Start/End: Original strand, 40699498 - 40699538
Alignment:
Q  328 gaacactctctttctaacactcaatctcttattgggtgaaa 368  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  40699498 gaacactctctttctaacactcactttcttattgggtgaaa 40699538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 340 - 419
Target Start/End: Complemental strand, 26072253 - 26072174
Alignment:
Q  340 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagac 419  Q
    |||| |||||| ||| |||||||||||||   |||||||  | |||| ||||||||| || |||||||||||||||||||    
T  26072253 tctagcactcactcttttattgggtgaaaacaatgtgggacctacactttggaaatgaattccacataaagtggtgagac 26072174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 366 - 440
Target Start/End: Complemental strand, 1249102 - 1249028
Alignment:
Q  366 aaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaata 440  Q
    |||||||||||| ||| |||| ||||||||||| ||||  ||||||| |||||| ||||||  ||| ||||||||    
T  1249102 aaatttatgtggttacgacactttggaaatggaccccatgtaaagtgatgagactcacatggatttcatccaata 1249028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 418
Target Start/End: Complemental strand, 6198663 - 6198601
Alignment:
Q  356 ttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgaga 418  Q
    ||||||||||||||  |||||||| |||||| ||| |||||| | ||||||||||| ||||||    
T  6198663 ttattgggtgaaatcgatgtgggtcccacactttgaaaatgggttccacataaagtcgtgaga 6198601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 415
Target Start/End: Original strand, 42224626 - 42224696
Alignment:
Q  345 cactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtg 415  Q
    |||||| ||| ||||||||||||||  |||| ||  | |||| ||||||||||| ||||||||||||||||    
T  42224626 cactcactcttttattgggtgaaatcaatgtaggacctacactttggaaatggaacccacataaagtggtg 42224696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 326 - 379
Target Start/End: Original strand, 18237153 - 18237206
Alignment:
Q  326 atgaacactctctttctaacactcaatctcttattgggtgaaatttatgtgggt 379  Q
    |||||||||||||||||||||||||   || | |||||||||||| ||||||||    
T  18237153 atgaacactctctttctaacactcaccttcctcttgggtgaaattcatgtgggt 18237206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 338 - 379
Target Start/End: Complemental strand, 22524436 - 22524395
Alignment:
Q  338 tttctaacactcaatctcttattgggtgaaatttatgtgggt 379  Q
    ||||||||||||| ||||||||||||||||||  ||||||||    
T  22524436 tttctaacactcactctcttattgggtgaaatacatgtgggt 22524395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 9e-39; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 330 - 456
Target Start/End: Complemental strand, 557535 - 557409
Alignment:
Q  330 acactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagt 429  Q
    ||||||||||||||||||||| ||||||||||| ||||||| ||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||    
T  557535 acactctctttctaacactcactctcttattggatgaaattcatgtgggtatcacacattaaaaatggatcccacataaagtggtgagacccacatgagt 557436  T
Q  430 tttatccaataggacaatgagtgttag 456  Q
    || | |||||||   ||||||||||||    
T  557435 ttcacccaatagattaatgagtgttag 557409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 336 - 431
Target Start/End: Original strand, 39237689 - 39237784
Alignment:
Q  336 tctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttt 431  Q
    |||||| |||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  39237689 tctttccaacactcactcttttattgggtgaagtttatgtgggtaccacacattggaaatggatcccatataaagtggtgagacccacatgagttt 39237784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 335 - 456
Target Start/End: Original strand, 47822007 - 47822128
Alignment:
Q  335 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 434  Q
    |||| ||||||||||| |||  |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |     
T  47822007 ctctctctaacactcactcttatattgggtgaaatccatgtgggtaccacacattggaaatggatcccacataaagtggtgagatccacatgggtttcac 47822106  T
Q  435 ccaataggacaatgagtgttag 456  Q
    ||||||| | | ||||||||||    
T  47822107 ccaatagaagagtgagtgttag 47822128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 340 - 497
Target Start/End: Original strand, 36738485 - 36738643
Alignment:
Q  340 tctaacactcaatctcttattgggtgaaatttatgtgggtaccaca-----cattggaaatggatcccacataaagtggtgagacccacatgagttttat 434  Q
    ||||||| ||| |||||||||| |||||||| ||| ||||||||||     | |||||||||||||||||||||||||||||||||||||||||||| |     
T  36738485 tctaacattcactctcttattgagtgaaattcatgcgggtaccacaacacacgttggaaatggatcccacataaagtggtgagacccacatgagtttcac 36738584  T
Q  435 ccaataggacaatgagtgttagttaaagaaagtgctagaaagagagtcttcataacatttctc 497  Q
    ||||||||| | ||||||||||  ||||  ||||||| ||||||||| ||| |||||||||||    
T  36738585 ccaataggagagtgagtgttag--aaag--agtgctaaaaagagagtgttcttaacatttctc 36738643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 347 - 501
Target Start/End: Complemental strand, 41873577 - 41873427
Alignment:
Q  347 ctcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaataggacaa 446  Q
    |||| ||| |||||||||||| || |||||||||||||||||| |||||||| ||||||||||||| |||||| ||||||||||| | ||||||  | |     
T  41873577 ctcactcttttattgggtgaagttcatgtgggtaccacacattagaaatggaacccacataaagtgatgagactcacatgagtttcacccaataaaaaag 41873478  T
Q  447 tgagtgttagttaaagaaagtgctagaaagagagtcttcataacatttctcttat 501  Q
    ||||||||||    ||| ||||||||||||||||| ||| || ||||||||||||    
T  41873477 tgagtgttag----agagagtgctagaaagagagtgttcctagcatttctcttat 41873427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 335 - 455
Target Start/End: Complemental strand, 43930112 - 43929994
Alignment:
Q  335 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 434  Q
    |||| ||||||||||| ||| ||||||||||||||| ||||||||||||||||||| ||||||||| || |||||||||||||| |||||| | ||||||    
T  43930112 ctctctctaacactcactcttttattgggtgaaattcatgtgggtaccacacattgaaaatggatcaca-ataaagtggtgaga-ccacattaattttat 43930015  T
Q  435 ccaataggacaatgagtgtta 455  Q
    |||||| |||||||| |||||    
T  43930014 ccaataagacaatgaatgtta 43929994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 352 - 454
Target Start/End: Original strand, 17878725 - 17878827
Alignment:
Q  352 tctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaataggacaatgagt 451  Q
    ||||||||||||||||| | ||||||||| |||||||| ||||| |||||||||||||||||||||| | |||||||||| | | ||||||| |||||||    
T  17878725 tctcttattgggtgaaagtcatgtgggtatcacacattagaaatagatcccacataaagtggtgagatcgacatgagtttcagctaataggagaatgagt 17878824  T
Q  452 gtt 454  Q
    |||    
T  17878825 gtt 17878827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 356 - 499
Target Start/End: Original strand, 42815604 - 42815743
Alignment:
Q  356 ttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaataggacaatgagtgtta 455  Q
    ||||||||||||||| ||||||||||| ||||||| |||||||| || |||||||||||||||||||||||||||| | | |||| ||   |||||        
T  42815604 ttattgggtgaaattcatgtgggtaccgcacattgaaaatggattccccataaagtggtgagacccacatgagtttcacctaataagagggtgagt---- 42815699  T
Q  456 gttaaagaaagtgctagaaagagagtcttcataacatttctctt 499  Q
    |||||||| |||| |||||||||||| ||| || ||||||||||    
T  42815700 gttaaagagagtgttagaaagagagtgttcctagcatttctctt 42815743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 326 - 456
Target Start/End: Complemental strand, 45508657 - 45508529
Alignment:
Q  326 atgaacactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacat 425  Q
    |||||||||||||  |||||||||  | |||||||||| |||||| |||||||||  ||||||||  |||||||||||| |||||||||||||||||| |    
T  45508657 atgaacactctct--ctaacactccctttcttattgggcgaaattcatgtgggtatgacacattgagaatggatcccacgtaaagtggtgagacccacgt 45508560  T
Q  426 gagttttatccaataggacaatgagtgttag 456  Q
    | |||| | ||||||| | ||||||||||||    
T  45508559 gggtttcacccaatagaagaatgagtgttag 45508529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 364 - 426
Target Start/End: Complemental strand, 48745352 - 48745290
Alignment:
Q  364 tgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatg 426  Q
    |||||||||||||| |||||||||||| |||||||||||||||||| || |||||||||||||    
T  48745352 tgaaatttatgtggataccacacattgcaaatggatcccacataaattgatgagacccacatg 48745290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 375 - 440
Target Start/End: Complemental strand, 29310535 - 29310470
Alignment:
Q  375 tgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaata 440  Q
    ||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  29310535 tgggtcccacactatggaaatggatcccacataaagtggtgagacccacatgagtttcacccaata 29310470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 360 - 440
Target Start/End: Complemental strand, 32377386 - 32377306
Alignment:
Q  360 tgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaata 440  Q
    |||||||||||||  |||||| ||||||||| |||| |||||||||||||||||| ||||| |||| | ||||||||||||    
T  32377386 tgggtgaaatttacatgggtatcacacattgaaaatcgatcccacataaagtggtaagacctacataaattttatccaata 32377306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 332 - 440
Target Start/End: Original strand, 25695904 - 25696012
Alignment:
Q  332 actctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttt 431  Q
    ||||||||| ||||| ||||||| ||||||  ||||||| ||| |  ||||||| ||| |||||||| | |||||||| |||||||| ||||||||||||    
T  25695904 actctctttttaacattcaatcttttattgtatgaaattcatgcgaataccacatattagaaatggacctcacataaaatggtgagatccacatgagttt 25696003  T
Q  432 tatccaata 440  Q
     | ||||||    
T  25696004 cacccaata 25696012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 374 - 427
Target Start/End: Original strand, 16082817 - 16082870
Alignment:
Q  374 gtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatga 427  Q
    |||||||||||| ||||||| ||||| |||||||||| ||||||||||||||||    
T  16082817 gtgggtaccacatattggaagtggattccacataaagaggtgagacccacatga 16082870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 346 - 431
Target Start/End: Complemental strand, 46947903 - 46947819
Alignment:
Q  346 actcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttt 431  Q
    ||||| |||||||| |||||||| | |||||| | |||||| ||| ||||| ||||| ||||||||||||||||||||||| ||||    
T  46947903 actcactctcttatagggtgaaactcatgtggtt-ccacactttgaaaatgcatcccgcataaagtggtgagacccacatgggttt 46947819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 335 - 422
Target Start/End: Complemental strand, 49160401 - 49160314
Alignment:
Q  335 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagaccca 422  Q
    |||| ||||||||| | | | ||||||| |||||| ||| || |||| |||||||| |||||||||||| |||||||| |||||||||    
T  49160401 ctctctctaacacttactttattattggatgaaatctatctgagtactacacattgaaaatggatcccaaataaagtgttgagaccca 49160314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 354 - 431
Target Start/End: Complemental strand, 3399124 - 3399043
Alignment:
Q  354 tcttattgggtgaaatttatgtgggtac----cacacattggaaatggatcccacataaagtggtgagacccacatgagttt 431  Q
    |||||||| |||||||| |||||||||     ||||||||| ||||  |||  |||||||||||||||||||||||||||||    
T  3399124 tcttattgagtgaaattcatgtgggtatataacacacattgaaaataaatcttacataaagtggtgagacccacatgagttt 3399043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 335 - 419
Target Start/End: Original strand, 26703465 - 26703549
Alignment:
Q  335 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagac 419  Q
    |||| |||| |||||| ||| ||||||||||||||  |||| ||  | |||| || |||||||| ||||||||||||||||||||    
T  26703465 ctctctctagcactcactcttttattgggtgaaataaatgtaggacctacactttagaaatggaacccacataaagtggtgagac 26703549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 329 - 408
Target Start/End: Complemental strand, 32000514 - 32000434
Alignment:
Q  329 aacactctctttctaacactcaatctcttattgggtgaaatttatgtgggtacca-cacattggaaatggatcccacataa 408  Q
    ||||| || ||| ||||||||| ||||||||||||||||||  |||||||| ||| ||||||| |||||||  ||||||||    
T  32000514 aacacactatttttaacactcactctcttattgggtgaaatacatgtgggttccaccacattgaaaatggacgccacataa 32000434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 332 - 367
Target Start/End: Original strand, 22159050 - 22159085
Alignment:
Q  332 actctctttctaacactcaatctcttattgggtgaa 367  Q
    ||||||||||||||||||| ||||||||||||||||    
T  22159050 actctctttctaacactcattctcttattgggtgaa 22159085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 332 - 367
Target Start/End: Original strand, 22217758 - 22217793
Alignment:
Q  332 actctctttctaacactcaatctcttattgggtgaa 367  Q
    ||||||||||||||||||| ||||||||||||||||    
T  22217758 actctctttctaacactcattctcttattgggtgaa 22217793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 4e-38; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 335 - 481
Target Start/End: Original strand, 32439504 - 32439646
Alignment:
Q  335 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 434  Q
    |||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||| || |||| ||    
T  32439504 ctctctctaacactcactctcttattgggtgaaattcatgtgggtaccacacattggaaatggatcccacataaagcggtgagccccacttgggtttcat 32439603  T
Q  435 ccaataggacaatgagtgttagttaaagaaagtgctagaaagagagt 481  Q
    ||||||| | ||| ||||||||    ||| |||||||||||||||||    
T  32439604 ccaatagaaaaataagtgttag----agagagtgctagaaagagagt 32439646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 335 - 497
Target Start/End: Complemental strand, 7447718 - 7447561
Alignment:
Q  335 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 434  Q
    |||| ||||||| ||| |||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |     
T  7447718 ctctctctaaca-tcactctcttgttgggtgaaattcatgtgggtaccacacattagaaatggatcccacataaagtggtgagacccacatgagcttcac 7447620  T
Q  435 ccaataggacaatgagtgttagttaaagaaagtgctagaaagagagtcttcataacatttctc 497  Q
    |||||||||    | ||| | |||| ||| | ||||||||||||||| ||| |||||||||||    
T  7447619 ccaatagga----gggtgattgttatagagaatgctagaaagagagtgttcctaacatttctc 7447561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 353 - 452
Target Start/End: Complemental strand, 17221646 - 17221547
Alignment:
Q  353 ctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaataggacaatgagtg 452  Q
    |||||||||| ||||||| |||| ||||||| |||||| |||| ||||||||||||||||||||| ||||| ||| ||| | | |||| || ||||||||    
T  17221646 ctcttattggatgaaattcatgtaggtaccatacattgaaaatagatcccacataaagtggtgagtcccacttgaatttcacctaataagagaatgagtg 17221547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 333 - 455
Target Start/End: Complemental strand, 30480018 - 30479895
Alignment:
Q  333 ctctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaa-tggatcccacataaagtggtgagacccacatgagttt 431  Q
    |||||||||||| ||| | ||| ||||| ||| | ||| ||||||||| ||||| || || | |||||||||||||||||||| ||||||||||  ||||    
T  30480018 ctctctttctaatacttactcttttatttggtaatattcatgtgggtatcacacttttgatactggatcccacataaagtggtaagacccacatatgttt 30479919  T
Q  432 tatccaataggacaatgagtgtta 455  Q
    ||  |||||||| ||||| |||||    
T  30479918 tactcaataggagaatgaatgtta 30479895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 394 - 437
Target Start/End: Original strand, 28030569 - 28030612
Alignment:
Q  394 atggatcccacataaagtggtgagacccacatgagttttatcca 437  Q
    |||||||||||||||||| |||||||||||||| |||| |||||    
T  28030569 atggatcccacataaagttgtgagacccacatgggtttcatcca 28030612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 9e-36; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 343 - 497
Target Start/End: Complemental strand, 48543288 - 48543138
Alignment:
Q  343 aacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaatagg 442  Q
    |||||||| ||||||||||||||||||| ||||||||| || |||||||||||||| |||||||||| |||||||||||||||| |||| ||||||||||    
T  48543288 aacactcactctcttattgggtgaaattcatgtgggtagcatacattggaaatggaccccacataaaatggtgagacccacatgtgtttaatccaatagg 48543189  T
Q  443 acaatgagtgttagttaaagaaagtgctagaaagagagtcttcataacatttctc 497  Q
    | | ||||||||||    ||  ||||||||||||||||| ||| || ||||||||    
T  48543188 agagtgagtgttag----agtgagtgctagaaagagagtgttcttagcatttctc 48543138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 335 - 497
Target Start/End: Complemental strand, 54187082 - 54186924
Alignment:
Q  335 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 434  Q
    |||| ||||||||||| |||||||||||||||| || |||||||||||||||||| ||||||||||||||||||| ||||||||  ||||||||||| |     
T  54187082 ctctctctaacactcactctcttattgggtgaagttcatgtgggtaccacacattagaaatggatcccacataaaatggtgagattcacatgagtttcac 54186983  T
Q  435 ccaataggacaatgagtgttagttaaagaaagtgctagaaagagagtcttcataacatttctc 497  Q
    ||||||||| | ||| ||||||    ||| |||| |||||||||||| ||| || ||||||||    
T  54186982 ccaataggagagtgaatgttag----agagagtgttagaaagagagtgttcttagcatttctc 54186924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 335 - 494
Target Start/End: Original strand, 29235675 - 29235832
Alignment:
Q  335 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 434  Q
    |||| ||||||||||| ||||||||||||||||||| ||| || ||||||||||| ||||||||||| ||||||||||||||||| || |||||||| |     
T  29235675 ctctctctaacactcactctcttattgggtgaaattcatgaggataccacacattagaaatggatccaacataaagtggtgagactcatatgagtttcac 29235774  T
Q  435 ccaataggacaatgagtgttagttaaagaaagtgctagaaagagagtcttcataacattt 494  Q
    ||||||||| | ||| |||  |||| |||  |||||||||||||||| ||| ||||||||    
T  29235775 ccaataggaaagtgaatgt--gttagagagggtgctagaaagagagtgttcctaacattt 29235832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 335 - 441
Target Start/End: Original strand, 13639430 - 13639536
Alignment:
Q  335 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 434  Q
    |||| ||||||| ||| ||| ||||||| ||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |     
T  13639430 ctctctctaacagtcactcttttattggatgaaattcatgtgggtatcacacattggaaatggatctcacataaagtggtgagacccacatgagtttcac 13639529  T
Q  435 ccaatag 441  Q
    |||||||    
T  13639530 ccaatag 13639536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 335 - 468
Target Start/End: Original strand, 38602836 - 38602967
Alignment:
Q  335 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 434  Q
    |||| ||||| ||||| ||| ||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||| |     
T  38602836 ctctctctaatactcactcttttattcggtaaaatttatgtgggtaccacacattgaaaatggatcccacataaagtagtgagactcacatgagtttcac 38602935  T
Q  435 ccaataggacaatgagtgttagttaaagaaagtg 468  Q
    ||||||||| | |||||| |||  ||||||||||    
T  38602936 ccaataggagagtgagtgctag--aaagaaagtg 38602967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 315 - 443
Target Start/End: Complemental strand, 46893517 - 46893391
Alignment:
Q  315 tgaggagtatcatgaacactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggt 414  Q
    |||||||| | ||| |||||||||  |||||||||| |||||||||   ||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  46893517 tgaggagtgttatggacactctct--ctaacactcactctcttattaaatgaaattcatgtgggtaacacacattggaaatggatcccacataaagtggt 46893420  T
Q  415 gagacccacatgagttttatccaatagga 443  Q
    |||||  | |||||||| |||||| ||||    
T  46893419 gagacgaagatgagtttcatccaacagga 46893391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 330 - 496
Target Start/End: Original strand, 50320436 - 50320597
Alignment:
Q  330 acactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagt 429  Q
    ||||||||||||||||| | | |||||||||||||||| || || |||||| |||||||| ||||| ||||||||||||| ||||||||| || ||||||    
T  50320436 acactctctttctaacatttattctcttattgggtgaagttcatatgggtatcacacattagaaat-gatcccacataaaatggtgagactcatatgagt 50320534  T
Q  430 tttatccaataggacaatgagtgttagttaaagaaagtgctagaaagagagtcttcataacatttct 496  Q
    || || |||||| | | ||||||||||    ||| ||||||||||||| ||| ||| || |||||||    
T  50320535 ttcattcaatagaagagtgagtgttag----agagagtgctagaaagaaagtgttcctagcatttct 50320597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 352 - 456
Target Start/End: Complemental strand, 20909429 - 20909325
Alignment:
Q  352 tctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaataggacaatgagt 451  Q
    ||||||||||||||||||| | ||||| |||||  |||| |||||||||||||||||||||||||||||||||||||||| | |||| |||| | | |||    
T  20909429 tctcttattgggtgaaattcaggtgggcaccacctattgaaaatggatcccacataaagtggtgagacccacatgagtttcacccaaaaggagagtaagt 20909330  T
Q  452 gttag 456  Q
    |||||    
T  20909329 gttag 20909325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 334 - 440
Target Start/End: Complemental strand, 28215881 - 28215775
Alignment:
Q  334 tctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagtttta 433  Q
    |||||||||||||| || ||||||||||||||||| | | ||||||  ||||| ||||||||||| ||| ||||||||| |||||||||||||||||| |    
T  28215881 tctctttctaacacccactctcttattgggtgaaactcacgtgggtctcacactttggaaatggaccccgcataaagtgatgagacccacatgagtttca 28215782  T
Q  434 tccaata 440  Q
     ||||||    
T  28215781 cccaata 28215775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 335 - 426
Target Start/End: Original strand, 42780698 - 42780789
Alignment:
Q  335 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatg 426  Q
    |||| ||||||||||| ||||||||||| ||||||  |||| |||  ||||| | | |||||||||||||||||||||||||||||||||||    
T  42780698 ctctctctaacactcattctcttattggatgaaatccatgtaggtctcacacttagaaaatggatcccacataaagtggtgagacccacatg 42780789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 329 - 427
Target Start/End: Complemental strand, 46156780 - 46156684
Alignment:
Q  329 aacactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatga 427  Q
    ||||||||||||  |||||||| ||| ||||||||||||||   ||||||  | |||||| ||||| || |||||||||||||||||||||||| ||||    
T  46156780 aacactctcttt--aacactcactcttttattgggtgaaatcgttgtggggcctacacataggaaaagggtcccacataaagtggtgagacccatatga 46156684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 330 - 395
Target Start/End: Original strand, 45800738 - 45800801
Alignment:
Q  330 acactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaat 395  Q
    ||||||| ||||||||||||| ||| |||||||||||||  ||||||||||||||||||| |||||    
T  45800738 acactctgtttctaacactcattcttttattgggtgaaa--tatgtgggtaccacacattagaaat 45800801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 335 - 415
Target Start/End: Complemental strand, 27243200 - 27243120
Alignment:
Q  335 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtg 415  Q
    |||||||||| ||||| ||||| ||||||| ||||  ||||||||   |||| ||||||||||| ||||||||||||||||    
T  27243200 ctctttctaatactcactctctcattgggttaaatcaatgtgggtcatacactttggaaatggaacccacataaagtggtg 27243120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 372 - 438
Target Start/End: Complemental strand, 26223256 - 26223190
Alignment:
Q  372 atgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaa 438  Q
    ||||||||| || | |||| ||||||||||||||||||||| ||||| |||||||| ||| ||||||    
T  26223256 atgtgggtaacatatattgaaaatggatcccacataaagtgatgagatccacatgaatttcatccaa 26223190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 356 - 417
Target Start/End: Complemental strand, 357894 - 357833
Alignment:
Q  356 ttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgag 417  Q
    ||||||| ||||||  |||| ||||| |||| ||||||||||| ||||||||||||||||||    
T  357894 ttattggatgaaatcaatgtaggtactacactttggaaatggaacccacataaagtggtgag 357833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 377
Target Start/End: Original strand, 3770541 - 3770586
Alignment:
Q  332 actctctttctaacactcaatctcttattgggtgaaatttatgtgg 377  Q
    |||||||||| |||||||| ||||||||||||||||||| ||||||    
T  3770541 actctctttccaacactcactctcttattgggtgaaattcatgtgg 3770586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 387 - 456
Target Start/End: Original strand, 54140813 - 54140882
Alignment:
Q  387 attggaaatggatcccacataaagtggtgagacccacatgagttttatccaataggacaatgagtgttag 456  Q
    ||||||||||||||||||||||||||||||||| | ||||| ||| | | |||| || | ||||||||||    
T  54140813 attggaaatggatcccacataaagtggtgagactcgcatgaatttcacctaataagagagtgagtgttag 54140882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 415
Target Start/End: Original strand, 50661541 - 50661627
Alignment:
Q  329 aacactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtg 415  Q
    ||||||||||||  |||||||  ||| ||||||||| ||||  ||||||||   |||  ||||||||||| ||||||||||||||||    
T  50661541 aacactctcttttgaacactctttcttttattgggttaaatcaatgtgggtcatacattttggaaatggaacccacataaagtggtg 50661627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 403 - 440
Target Start/End: Complemental strand, 1741372 - 1741335
Alignment:
Q  403 acataaagtggtgagacccacatgagttttatccaata 440  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  1741372 acataaagtggtgagacccacatgagtttaatctaata 1741335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 64; Significance: 2e-27; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 352 - 431
Target Start/End: Original strand, 710 - 789
Alignment:
Q  352 tctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttt 431  Q
    |||||||||| |||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  710 tctcttattgagtgaaattcatgtggataccacacattgaaaatggatcccacataaagtggtgagacccacatgagttt 789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 48; Significance: 7e-18; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 328 - 455
Target Start/End: Complemental strand, 28458 - 28331
Alignment:
Q  328 gaacactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatga 427  Q
    |||||| ||||||| ||||| || ||||||||||||||||||  |||||||| |||||| ||| |||||| ||||||||||| || || |||||||||      
T  28458 gaacacactctttccaacacccactctcttattgggtgaaatcaatgtgggtcccacactttgaaaatgggtcccacataaattgatgggacccacattg 28359  T
Q  428 gttttatccaataggacaatgagtgtta 455  Q
     ||| |||||||| || | |||||||||    
T  28358 atttcatccaataagaaagtgagtgtta 28331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 364 - 425
Target Start/End: Original strand, 17925 - 17985
Alignment:
Q  364 tgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacat 425  Q
    |||||||||||| ||||||| || ||||||| |||| |||||||||||||| | ||||||||    
T  17925 tgaaatttatgtaggtaccaaactttggaaagggat-ccacataaagtggttaaacccacat 17985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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