View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5039_1D_high_10 (Length: 401)

Name: NF5039_1D_high_10
Description: NF5039_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5039_1D_high_10
NF5039_1D_high_10
[»] chr3 (18 HSPs)
chr3 (11-390)||(679239-679620)
chr3 (144-390)||(751046-751290)
chr3 (11-146)||(747402-747538)
chr3 (22-139)||(7324687-7324804)
chr3 (23-139)||(2491755-2491871)
chr3 (18-142)||(9594898-9595022)
chr3 (11-137)||(2501817-2501944)
chr3 (26-139)||(9566094-9566207)
chr3 (26-130)||(7443269-7443373)
chr3 (32-139)||(9562235-9562342)
chr3 (23-139)||(2474778-2474895)
chr3 (146-306)||(2632504-2632659)
chr3 (23-131)||(754888-754996)
chr3 (23-127)||(2644633-2644737)
chr3 (23-127)||(2659420-2659524)
chr3 (23-119)||(7334560-7334656)
chr3 (23-146)||(2631015-2631138)
chr3 (23-139)||(2476310-2476426)


Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 11 - 390
Target Start/End: Complemental strand, 679620 - 679239
Alignment:
Q  11 atggacatca-tcagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggat 109  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  679620 atggacatcactaagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggat 679521  T
Q  110 gattattggacaagaatagagggcatcccacattatttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  679520 gattattggacaagaatagagggcatcccacattatttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattc 679421  T
Q  210 tttcaacacttgctcttttgattatcatagtatcatatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaa 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  679420 tttcaacacttgctcttttgattatcatagtatcatatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaa 679321  T
Q  310 atatagttatatgcctcattttca-nnnnnnnnnnctttctagttcttagaattagaagaatgctgcgtatatttgagtatt 390  Q
    || |||||||||||||||||||||           |||||||||||| ||||||||||||||||||||||||||||||||||    
T  679320 atgtagttatatgcctcattttcatttttttttttctttctagttctgagaattagaagaatgctgcgtatatttgagtatt 679239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 144 - 390
Target Start/End: Complemental strand, 751290 - 751046
Alignment:
Q  144 atttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattctttcaacacttgctcttttgattatcatagtatc 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  751290 atttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattctttcaacacttgctcttttgattatcatagtatc 751191  T
Q  244 atatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaaatatagttatatgcctcattttcannnnnnnnnn 343  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||              
T  751190 atatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaaatatagttctatgcctcattttcatttattttt- 751092  T
Q  344 ctttctagttcttagaattagaagaatgctgcgtatatttgagtatt 390  Q
     ||||||||||||||||||||||||||||||||||||||||||||||    
T  751091 -tttctagttcttagaattagaagaatgctgcgtatatttgagtatt 751046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 11 - 146
Target Start/End: Complemental strand, 747538 - 747402
Alignment:
Q  11 atggacatca-tcagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggat 109  Q
    |||||||||| | |||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||| | ||||||||||||||| |    
T  747538 atggacatcactaagctttggatatgatcatttcattgataattataaggtcgttgttgtttcttcagaaaaagaggttttttttaatactttgggggct 747439  T
Q  110 gattattggacaagaatagagggcatcccacattatt 146  Q
    |||||||||| ||||||||||||||||||||||||||    
T  747438 gattattggaaaagaatagagggcatcccacattatt 747402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 22 - 139
Target Start/End: Complemental strand, 7324804 - 7324687
Alignment:
Q  22 cagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggaca 121  Q
    ||||||||| || |||||||| ||||||||  |||||||  |||||||||||||  ||||  | ||| |||||||||||||||||  |||||||||||||    
T  7324804 cagctttgggtacgatcatttaattgataactataaggtcattgttgtttcttccaaaaataaagttagtgttaatactttggggactgattattggaca 7324705  T
Q  122 agaatagagggcatccca 139  Q
    |||||||||| |||||||    
T  7324704 agaatagaggacatccca 7324687  T

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Target: chr3; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 23 - 139
Target Start/End: Original strand, 2491755 - 2491871
Alignment:
Q  23 agctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaa 122  Q
    |||||||| |||||||||||||||||| |  |||||||  ||| ||||||||| ||||| || ||| ||||| |||||||||||  ||||||||||||||    
T  2491755 agctttgggtatgatcatttcattgatgattataaggtcattggtgtttcttccgaaaatgaagttagtgtttatactttggggactgattattggacaa 2491854  T
Q  123 gaatagagggcatccca 139  Q
    ||||  ||| |||||||    
T  2491855 gaatcaaggacatccca 2491871  T

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Target: chr3; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 9595022 - 9594898
Alignment:
Q  18 tcatcagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattg 117  Q
    |||| ||||| || ||||||||||||||||||||  |||||||  ||| | || ||||  |||| || |||| |||| |||||||||||  |||||||||    
T  9595022 tcataagcttcgggtatgatcatttcattgataagtataaggtcattgattttgcttccaaaaatgatgtttttgtttatactttggggactgattattg 9594923  T
Q  118 gacaagaatagagggcatcccacat 142  Q
    |||||||||||||| ||||||||||    
T  9594922 gacaagaatagaggacatcccacat 9594898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 11 - 137
Target Start/End: Original strand, 2501817 - 2501944
Alignment:
Q  11 atggacatca-tcagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggat 109  Q
    |||||||||| | |||||||||||||||||||||||||||||  |||||||  |||||||||||   ||||| || ||| | |||||||||||||||  |    
T  2501817 atggacatcactaagctttggatatgatcatttcattgataattataaggtcattgttgtttctgacgaaaatgaagttagggttaatactttggggact 2501916  T
Q  110 gattattggacaagaatagagggcatcc 137  Q
    |||||||||| ||  ||||||| |||||    
T  2501917 gattattggagaaagatagaggacatcc 2501944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 26 - 139
Target Start/End: Complemental strand, 9566207 - 9566094
Alignment:
Q  26 tttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaa 125  Q
    ||||| ||||||||||||||||||||  ||||| |  ||  ||||||| || |||| || ||| ||||| |||||||||||  |||||||||||||||||    
T  9566207 tttgggtatgatcatttcattgataattataagctcatttctgtttctacaaaaaatgaagttagtgtttatactttggggactgattattggacaagaa 9566108  T
Q  126 tagagggcatccca 139  Q
    |||||| |||||||    
T  9566107 tagaggacatccca 9566094  T

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Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 130
Target Start/End: Complemental strand, 7443373 - 7443269
Alignment:
Q  26 tttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaa 125  Q
    ||||| ||||||||||||||||||||  |||| ||||||| | |||||||  || | ||||||| ||||||| ||||||||  ||||||||||| |||||    
T  7443373 tttgggtatgatcatttcattgataattataaagttgttgctatttcttccaaatatgaggtttttgttaatgctttggggactgattattggagaagaa 7443274  T
Q  126 tagag 130  Q
    |||||    
T  7443273 tagag 7443269  T

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Target: chr3; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 32 - 139
Target Start/End: Complemental strand, 9562342 - 9562235
Alignment:
Q  32 tatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaatagagg 131  Q
    ||||||||||||||||||||  |||||||  ||||||||||| |  |||| || ||| ||||| |||||||||||  |||||||||||  ||||||||||    
T  9562342 tatgatcatttcattgataattataaggtcattgttgtttctaccaaaaatgaagttagtgtttatactttggggactgattattggaagagaatagagg 9562243  T
Q  132 gcatccca 139  Q
     |||||||    
T  9562242 acatccca 9562235  T

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Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 139
Target Start/End: Original strand, 2474778 - 2474895
Alignment:
Q  23 agctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttggggga-tgattattggaca 121  Q
    |||||||||||||||||||||||||||||  | ||||   ||||  |||||||  |||| || ||| |||||||||||||   ||| |||||||||||||    
T  2474778 agctttggatatgatcatttcattgataattacaaggccattgtattttcttccaaaaatgaagttagtgttaatacttttaaggactgattattggaca 2474877  T
Q  122 agaatagagggcatccca 139  Q
    |||||||||| |||||||    
T  2474878 agaatagaggacatccca 2474895  T

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Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 146 - 306
Target Start/End: Original strand, 2632504 - 2632659
Alignment:
Q  146 ttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcag----attctttcaacacttgctcttttgattatcatagta 241  Q
    |||||||||||||||||||||||| |||||||||| ||     |||||||||||||||||     |||||||| |||| | |||||  ||||||||||      
T  2632504 ttcaattctccaaaccctgcagttttaaaatcagcaca----ttgttttgtgaagatcaggtcttttctttcaccactcgttctttgtattatcatag-- 2632597  T
Q  242 tcatatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagttt 306  Q
    ||||| ||||||||||||| | || |||||   | |||||||||| | |||||||||||||||||    
T  2632598 tcatacacttcacatgtgtgtgaataattc---atatttagctttttgaaacttatagtgagttt 2632659  T

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Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 131
Target Start/End: Complemental strand, 754996 - 754888
Alignment:
Q  23 agctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaa 122  Q
    |||||||| ||||||||||||||| ||||  | |||||  ||  ||||||| || |||| || ||||||||| |||| ||||||  ||||||||||||||    
T  754996 agctttgggtatgatcatttcattcataattacaaggtcatttctgtttctacaaaaaatgaagtttgtgtttatacattggggactgattattggacaa 754897  T
Q  123 gaatagagg 131  Q
    |||||||||    
T  754896 gaatagagg 754888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 2644737 - 2644633
Alignment:
Q  23 agctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaa 122  Q
    ||||||||||||||||| ||| |||||||  |||||||  || ||||||||   ||||| || ||| | |||||||||||||||  ||||||||||||||    
T  2644737 agctttggatatgatcacttcgttgataattataaggtcattattgtttctgacgaaaatgaagttagggttaatactttggggactgattattggacaa 2644638  T
Q  123 gaata 127  Q
    |||||    
T  2644637 gaata 2644633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 2659524 - 2659420
Alignment:
Q  23 agctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaa 122  Q
    |||||||||||||||||||| ||||||||  ||||||||||||    |||||   |||||| | || |||||||||||||||||  ||||||||||| ||    
T  2659524 agctttggatatgatcattttattgataattataaggttgttgcccattctttcaaaaaagtgattagtgttaatactttggggactgattattggagaa 2659425  T
Q  123 gaata 127  Q
    |||||    
T  2659424 gaata 2659420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 23 - 119
Target Start/End: Complemental strand, 7334656 - 7334560
Alignment:
Q  23 agctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattgga 119  Q
    ||||| |||||||||||||||||||||||  ||||||| |||| |||||||  | ||||| | ||| ||||| ||||||||||   |||||||||||    
T  7334656 agcttcggatatgatcatttcattgataattataaggtcgttgctgtttctgtaaaaaaaaaagttagtgtttatactttgggaactgattattgga 7334560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 146
Target Start/End: Original strand, 2631015 - 2631138
Alignment:
Q  23 agctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaa 122  Q
    |||||||| ||||||  ||||||||||||  |||||||  ||| |||||||||  |||| || |||| | || ||||||| |||  ||||||||||| ||    
T  2631015 agctttgggtatgattgtttcattgataagtataaggtcattgctgtttcttccaaaaatgaagtttttctttatactttagggactgattattggaaaa 2631114  T
Q  123 gaatagagggcatcccacattatt 146  Q
    ||||||| | ||||||| ||||||    
T  2631115 gaatagacgacatcccatattatt 2631138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 139
Target Start/End: Original strand, 2476310 - 2476426
Alignment:
Q  23 agctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaa 122  Q
    |||||||| ||||||||||  ||||||||  | |||||  || ||||||||    |||| || ||| |||||||||||||||||  ||||||||||||||    
T  2476310 agctttgggtatgatcattctattgataactacaaggtcattcttgtttctgacaaaaacgaagttagtgttaatactttggggactgattattggacaa 2476409  T
Q  123 gaatagagggcatccca 139  Q
    ||||  ||| |||||||    
T  2476410 gaatgcaggacatccca 2476426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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