View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_1D_high_14 (Length: 309)
Name: NF5039_1D_high_14
Description: NF5039_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_1D_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 134; Significance: 9e-70; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 16 - 185
Target Start/End: Original strand, 19474127 - 19474296
Alignment:
| Q |
16 |
ggacatcaacagaaatctagaatgaccatcaatgccacgatgcagccaaacataaagataatccccttgaaagaacgataagtcggtaaagccaatagct |
115 |
Q |
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| T |
19474127 |
ggacataaacagaaatctagaatgaccatcaataccacgacgcagccaaacataaagatcatccccttgaaagaacgataagttggtaaagccaatagct |
19474226 |
T |
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| Q |
116 |
taccaaagacgtgtcgcaaagttgtaatccttaggtaagtggaatgagatttaaactcatttaacatcta |
185 |
Q |
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| T |
19474227 |
taccaaagacgtgtcgcaaagttgcaattatgaggtaagtggaatgagatttaaactcatttaacatcta |
19474296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 211 - 309
Target Start/End: Original strand, 19474315 - 19474413
Alignment:
| Q |
211 |
ggttaaaattcaaagtactaggtgcaactcttttcctctagagggagaaatataaagtttaaaattacaagctgctatattattgaccttttcaaaaag |
309 |
Q |
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| T |
19474315 |
ggttaaaattcaaaatactaggtgcaactcttttcctctagacggggaaatataaagtttaaaattacaagctgctatattattgaccttttcaaaaag |
19474413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 25785916 - 25785853
Alignment:
| Q |
17 |
gacatcaacagaaatctagaatgaccatcaatgccacgatgcagccaaacataaagataatccc |
80 |
Q |
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| T |
25785916 |
gacataaacaaaaagctagatttaccatcaataccacgacgcagccaaacataaagatcatccc |
25785853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 135
Target Start/End: Complemental strand, 3941632 - 3941511
Alignment:
| Q |
15 |
tggacatcaacagaaatctagaatgaccatcaatgccacgat-gcagccaaacataaagataatccccttgaaagaacgataagtcggtaaagccaatag |
113 |
Q |
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||||||| || |||||||||||||| |||||||| |||| | ||||||||||||||||||||| || ||| ||||| |||||||||||||||||||||| |
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| T |
3941632 |
tggacataaaaagaaatctagaatggccatcaataccacaaacgcagccaaacataaagataattcctttggaagaaagataagtcggtaaagccaatag |
3941533 |
T |
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| Q |
114 |
cttaccaaagacgtgtcgcaaa |
135 |
Q |
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| T |
3941532 |
tttgccaaggacgagtcgcaaa |
3941511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 33172781 - 33172855
Alignment:
| Q |
16 |
ggacatcaacagaaatctagaatgaccatcaatgccacgatgcagccaaacataaagataatccccttgaaagaa |
90 |
Q |
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| T |
33172781 |
ggacataaacagaaatctaaaatggccatcaataccacgcggaagccgaacataaagatcatccccttgaaagaa |
33172855 |
T |
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