View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5039_1D_high_2 (Length: 938)

Name: NF5039_1D_high_2
Description: NF5039_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5039_1D_high_2
NF5039_1D_high_2
[»] chr5 (4 HSPs)
chr5 (357-938)||(38815928-38816509)
chr5 (20-361)||(38815437-38815781)
chr5 (797-935)||(38821782-38821917)
chr5 (511-560)||(38821542-38821591)
[»] chr7 (2 HSPs)
chr7 (225-322)||(39079876-39079973)
chr7 (273-330)||(21048692-21048749)
[»] chr1 (1 HSPs)
chr1 (225-322)||(19810946-19811043)
[»] chr2 (3 HSPs)
chr2 (383-462)||(5424847-5424925)
chr2 (258-304)||(33455859-33455905)
chr2 (268-313)||(7252252-7252297)
[»] chr8 (1 HSPs)
chr8 (225-279)||(25971173-25971227)
[»] chr6 (2 HSPs)
chr6 (274-320)||(2115530-2115576)
chr6 (227-280)||(18286713-18286766)
[»] chr3 (1 HSPs)
chr3 (268-313)||(1348868-1348913)


Alignment Details
Target: chr5 (Bit Score: 570; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 357 - 938
Target Start/End: Original strand, 38815928 - 38816509
Alignment:
Q  357 acttaggccatgtctcttggtcatgcgggactaaacccgacctctcaagtccaacacaatgaaggtgttggaagcgacaatgagggaaaacctaaatgcc 456  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  38815928 acttaggccatgtctcttggtcatgcgggactaaacccgacctctcaagtccaacacaatgaaggtgttggaagcgacaatgagggaaaacccaaatgcc 38816027  T
Q  457 gcaattaaggtggttagaggcagaccacaattaaagtagaatttcccaacaacagtaaaattaattttaaaaattacacttctataactaggtttacatt 556  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816028 gcaattaaggtggttagaggcagtccacaattaaagtagaatttcccaacaacagtaaaattaattttaaaaattacacttctataactaggtttacatt 38816127  T
Q  557 tctatcttatccaattcccttcacagaatcacatgcacaattaacataactcagtgaaagaaaatgcaagaaaaggtatattgtatcctttgaacctcaa 656  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816128 tctatcttatccaattcccttcacagaatcacatgcacaattatcataactcagtgaaagaaaatgcaagaaaaggtatattgtatcctttgaacctcaa 38816227  T
Q  657 tttctcacctacccaaagaaacctcatacaactatatacccttctctaacagacaaagtcagtttaatttacataaggccgtgatgtataccaactgtaa 756  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816228 tttctcacctacccaaagaaacctcatacaactatatacccttctctaacagacaaagtcagtttaatttacataaggccgtgatgtataccaactgtaa 38816327  T
Q  757 ccacaaaaagtagccaactgcaaaatctagacaaaatgtaaaaccctaagaacaaggtttaattaaacctaaacaacagcataccatttgtccctttctc 856  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816328 ccacaaaaagtagccaactgcaaaatctagacaaaatgtaaaaccctaagaacaaggtttaattaaacctaaacaacagcataccatttgtccctttctc 38816427  T
Q  857 acccacccaagcattcctccttcatctttagaagggcaaattgaatgttccacagcaagatcactcaaatcttcacctgaac 938  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816428 acccacccaagcattcctccttcatctttagaagggcaaattgaatgttccacagcaagatcactcaaatcttcacctgaac 38816509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 20 - 361
Target Start/End: Original strand, 38815437 - 38815781
Alignment:
Q  20 caccacacaa-gaggcccttcacggctatttagatctctaggctgtgtaggactaacccagcctctcacacccagcaaaattaaggtgctcgaagctgca 118  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38815437 caccacacaaagaggcccttcacggctatttagatctctaggctgtgtaggactaacccagcctctcacacccagcaaaattaaggtgctcgaagctgca 38815536  T
Q  119 atgaaggaaatttaaaagccaaatttaagatggctaggggcagaccacaatcaaggcaaaatttccaacac--tgcctcacaacctggcataaattgggc 216  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |    
T  38815537 atgaaggaaatttaaaagccaaatttaagatggctaggggaagaccacaatcaaggcaaaatttccaacaccctgcctcacaacctggcataaattggac 38815636  T
Q  217 taggggcatggacaatgcgggcagtccaacaacagatctaggatagactccgatatcatcttagagtttgggttgagtctaattcaaccctacaaaatcg 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38815637 taggggcatggacaatgcgggcagtccaacaacagatctaggatagactccgatatcatcttagagtttgggttgagtctaattcaaccctacaaaatcg 38815736  T
Q  317 gcttgtcaggtgcgcactgtccaaacttacaagcactactactta 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  38815737 gcttgtcaggtgcgcactgtccaaacttacaagcactactactta 38815781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 797 - 935
Target Start/End: Original strand, 38821782 - 38821917
Alignment:
Q  797 aaaccctaagaacaaggtttaattaaacctaaacaacagcataccatttgtccctttctcacccacccaagcattcctccttcatctttagaagggcaaa 896  Q
    |||||||||||||||| |||||  ||| ||||||| ||   ||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||| |    
T  38821782 aaaccctaagaacaagatttaagcaaatctaaacatca---taccatttgtccctttctcacccacccaagccttcctccttcttctttagatgggcaca 38821878  T
Q  897 ttgaatgttccacagcaagatcactcaaatcttcacctg 935  Q
      ||||  |||||||||||||| ||||||||||||||||    
T  38821879 ccgaatagtccacagcaagatcgctcaaatcttcacctg 38821917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 511 - 560
Target Start/End: Original strand, 38821542 - 38821591
Alignment:
Q  511 gtaaaattaattttaaaaattacacttctataactaggtttacatttcta 560  Q
    |||||||||||||||||||   ||||||||||||||||| || |||||||    
T  38821542 gtaaaattaattttaaaaaaggcacttctataactaggtctatatttcta 38821591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 225 - 322
Target Start/End: Original strand, 39079876 - 39079973
Alignment:
Q  225 tggacaatgcgggcagtccaacaacagatctaggatagactccgatatcatcttagagtttgggttgagtctaattcaaccctacaaaatcggcttgt 322  Q
    |||||||||| || || ||||| ||||||||||||||| ||| |||  ||||||| | ||||||||| | |||| | |||| ||||||| ||||||||    
T  39079876 tggacaatgcaggaagcccaacgacagatctaggataggctctgatgccatcttaaaatttgggttgggcctaactaaaccttacaaaaccggcttgt 39079973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 273 - 330
Target Start/End: Original strand, 21048692 - 21048749
Alignment:
Q  273 catcttagagtttgggttgagtctaattcaaccctacaaaatcggcttgtcaggtgcg 330  Q
    ||||||||| ||||||||||| |||| |||||| || ||||| ||||||| |||||||    
T  21048692 catcttagaatttgggttgagcctaactcaaccttataaaattggcttgtaaggtgcg 21048749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 225 - 322
Target Start/End: Original strand, 19810946 - 19811043
Alignment:
Q  225 tggacaatgcgggcagtccaacaacagatctaggatagactccgatatcatcttagagtttgggttgagtctaattcaaccctacaaaatcggcttgt 322  Q
    ||||| ||||||| || ||  ||||||||||||||||| ||| |||| ||||||| | ||||||||  | |||| |||||| ||||||| ||||||||    
T  19810946 tggacgatgcgggaagccctgcaacagatctaggatagtctctgataccatcttaaaatttgggttcggcctaagtcaaccttacaaaaccggcttgt 19811043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 462
Target Start/End: Original strand, 5424847 - 5424925
Alignment:
Q  383 gggactaaacccgacctctcaagtccaacacaatgaaggtgttggaagcgacaatgagggaaaacctaaatgccgcaatt 462  Q
    ||||||||||||  ||||||||   ||||||||||||||||||||| ||  |||||| |||||||| ||| |||||||||    
T  5424847 gggactaaacccaccctctcaaaggcaacacaatgaaggtgttggaggctgcaatgaaggaaaacc-aaaggccgcaatt 5424925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 258 - 304
Target Start/End: Complemental strand, 33455905 - 33455859
Alignment:
Q  258 gatagactccgatatcatcttagagtttgggttgagtctaattcaac 304  Q
    ||||||||| |||| ||||||||| |||||||||||||||| |||||    
T  33455905 gatagactctgataccatcttagaatttgggttgagtctaactcaac 33455859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 268 - 313
Target Start/End: Complemental strand, 7252297 - 7252252
Alignment:
Q  268 gatatcatcttagagtttgggttgagtctaattcaaccctacaaaa 313  Q
    |||| ||||||||| ||||||||||| |||| ||||||||||||||    
T  7252297 gataccatcttagaatttgggttgagcctaactcaaccctacaaaa 7252252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 225 - 279
Target Start/End: Complemental strand, 25971227 - 25971173
Alignment:
Q  225 tggacaatgcgggcagtccaacaacagatctaggatagactccgatatcatctta 279  Q
    ||||| ||||||| |||||||||||||||||||||||| ||| |||  |||||||    
T  25971227 tggacgatgcgggaagtccaacaacagatctaggataggctctgattccatctta 25971173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 274 - 320
Target Start/End: Complemental strand, 2115576 - 2115530
Alignment:
Q  274 atcttagagtttgggttgagtctaattcaaccctacaaaatcggctt 320  Q
    |||||| | |||||||||||||||||| |||||||||||| ||||||    
T  2115576 atcttaaaatttgggttgagtctaattgaaccctacaaaaccggctt 2115530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 227 - 280
Target Start/End: Complemental strand, 18286766 - 18286713
Alignment:
Q  227 gacaatgcgggcagtccaacaacagatctaggatagactccgatatcatcttag 280  Q
    ||||||||||| || || |||||||||||| ||||| ||| |||||||||||||    
T  18286766 gacaatgcgggaagcccgacaacagatctacgataggctctgatatcatcttag 18286713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 268 - 313
Target Start/End: Original strand, 1348868 - 1348913
Alignment:
Q  268 gatatcatcttagagtttgggttgagtctaattcaaccctacaaaa 313  Q
    |||||||||||| | |||||||||||||||| |||||| |||||||    
T  1348868 gatatcatcttaaaatttgggttgagtctaactcaaccatacaaaa 1348913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University