View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_1D_high_21 (Length: 226)
Name: NF5039_1D_high_21
Description: NF5039_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_1D_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 1047111 - 1047305
Alignment:
| Q |
18 |
acatcaactgttgtagttgcaagatccgtgaacaattcaaatgaagtttattacacatatagtcttgtaaacaagagtaatgtttcaataacttatttga |
117 |
Q |
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| T |
1047111 |
acatcaactgttgttgttgcaagatctgtgaacaattcaaatgaggtttattactcatatagtcttgtaaacaagagtaatgtttcaataacttatttga |
1047210 |
T |
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| Q |
118 |
accaaacgcttagtcttcacgaacgcattatatggagtccagaggacaatacttggagtggtattgagtcagtaccaaaagataattgtgatgtc |
212 |
Q |
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| T |
1047211 |
accaaacgcttagtcttcacgaacgcattatatggagtccagaggacaatacttggagtggtattgagtcagtaccaaaagatgattgtgatgtc |
1047305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 45 - 212
Target Start/End: Original strand, 1071951 - 1072118
Alignment:
| Q |
45 |
gtgaacaattcaaatgaagtttattacacatatagtcttgtaaacaagagtaatgtttcaataacttatttgaaccaaacgcttagtcttcacgaacgca |
144 |
Q |
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| T |
1071951 |
gtgatcaattcaaatgaagtttatttcacatatagtcttgtaaacaagagtatggtttcaataacttatttgaaccaaacgcttagtcttcatgaacgcg |
1072050 |
T |
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| Q |
145 |
ttatatggagtccagaggacaatacttggagtggtattgagtcagtaccaaaagataattgtgatgtc |
212 |
Q |
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| T |
1072051 |
ttatatggagtccagaggacaacacttggagcgatattcagtcagtaccaaaaaatgattgtgatgtc |
1072118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 45 - 212
Target Start/End: Original strand, 1087612 - 1087779
Alignment:
| Q |
45 |
gtgaacaattcaaatgaagtttattacacatatagtcttgtaaacaagagtaatgtttcaataacttatttgaaccaaacgcttagtcttcacgaacgca |
144 |
Q |
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| T |
1087612 |
gtgaacaattcaaatgaagtttattacatatatagtcttgtaaacaagagtaatgtttcaataacttatttgaaccaaacaactagtcatcgcgaacgtg |
1087711 |
T |
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| Q |
145 |
ttatatggagtccagaggacaatacttggagtggtattgagtcagtaccaaaagataattgtgatgtc |
212 |
Q |
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| T |
1087712 |
ttaattggattccagaagacgatacttggagtgttattgagtcgttgccaaaagatgattgtgatgtc |
1087779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 45 - 124
Target Start/End: Original strand, 1104165 - 1104244
Alignment:
| Q |
45 |
gtgaacaattcaaatgaagtttattacacatatagtcttgtaaacaagagtaatgtttcaataacttatttgaaccaaac |
124 |
Q |
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| T |
1104165 |
gtgaacaatacaaatgaagtttactacacatatagtcttgtaaacaagagtaatgtttcaataacttatttgaaccaaac |
1104244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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