View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_1D_high_5 (Length: 547)
Name: NF5039_1D_high_5
Description: NF5039_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_1D_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 1 - 525
Target Start/End: Original strand, 19474676 - 19475200
Alignment:
| Q |
1 |
aaaacaacaccataccataaactttgtttcaactcattaaaactttccatatccataaacataaacccaaacatcataacctaccttcttcattcacttc |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19474676 |
aaaacaacaccataccctaaactttgtttcaactcattaaaactttccatatccataaacataaacccaaacatcataacctaccttcttcattcacttc |
19474775 |
T |
|
| Q |
101 |
aactagcaatatccgaaaccacaaagctctcgaatcttttccacgacgttggaacatcgaatatcgtagagaaacaacgaggatcaattcaagactgcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19474776 |
aactagcaatatccgaaaccacaaagctctcgaatcttttccacgacgttggaacatcgaatatcgtagagaaacaacgaggatcaattcaagactgcaa |
19474875 |
T |
|
| Q |
201 |
ggaacttcatcaatcaaccttaacttcattgaaaagatcattatccggaatccgttcctcgaacaaaagaaacatagctgatgctagaatctacctcagt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19474876 |
ggaacttcatcaatcaaccttaacttcattgaaaagatcattatccggaatccgttcctcgaacaaaagaaacatagctgatgctagaatctacctcagt |
19474975 |
T |
|
| Q |
301 |
gcagccctaaccaacaaaaacacatgtttagatggtcttgattctgcttctggtacatataaaccaattcttgtggattctattatcaacacttacaaac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19474976 |
gcagccctaaccaacaaaaacacatgtttagatggtcttgattctgcttctggtacatataaaccaattcttgtggattctattatcaacacttacaaac |
19475075 |
T |
|
| Q |
401 |
atgtaagtaactctctttctatgctttctaatcatgcacctgagccttcaaatcaaaagggtcacaacaaaaatttggtttctccaaaatggttatcaaa |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19475076 |
atgtaagtaactctctttctatgctttctaatcatgcacctgagccttcaaatcaaaagggtcacaacaaaaatttggtttctccaaaatggttatcaaa |
19475175 |
T |
|
| Q |
501 |
aaggttagatattgatgaatatgat |
525 |
Q |
| |
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|||||||||| |||||||||||||| |
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| T |
19475176 |
aaggttagattttgatgaatatgat |
19475200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 28 - 416
Target Start/End: Original strand, 51546810 - 51547196
Alignment:
| Q |
28 |
ttcaactcattaaaactttccatatccataaacataaacccaaacatcataacctaccttcttcattcacttcaactagcaatatccgaaaccacaaagc |
127 |
Q |
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||||| |||| |||||| ||||| || ||| ||||||| ||||||||||| | | |||||||||||| || ||| || ||||||| ||||||||||||| |
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| T |
51546810 |
ttcaattcatcaaaactctccatctcaatagacataaatccaaacatcattaacatccttcttcattccctccaagtatcaatatctgaaaccacaaagc |
51546909 |
T |
|
| Q |
128 |
tctcgaatcttttccacgacgttggaacatcgaatatcgtagagaaacaacgaggatcaattcaagactgcaaggaacttcatcaatcaaccttaacttc |
227 |
Q |
| |
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|||| |||| ||| || | | | || || || ||||||||||| || ||||| | || ||||| ||| | |||||||| ||||| |||||| |||| |
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| T |
51546910 |
tctctaatcaattcaacaatgct--cac-tcaaacatcgtagagaacaaaagaggagctatacaagattgcgaagaacttcaacaatctaccttatcttc |
51547006 |
T |
|
| Q |
228 |
-attgaaaagatcattatccggaatccgttcctcgaacaaaagaaacatagctgatgctagaatctacctcagtgcagccctaaccaacaaaaacacatg |
326 |
Q |
| |
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| | ||||||||||| || ||||| ||||| || || ||||| ||| |||||| |||| || || ||||||||||| |||||||| |||||||| |
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| T |
51547007 |
aactaaaaagatcattgtctggaattcgttcatcaaaatctagaaagttagttgatgcaagaacttatctaagtgcagcccttaccaacaagaacacatg |
51547106 |
T |
|
| Q |
327 |
tttagatggtcttgattctgcttctggtacatataaaccaattcttgtggattctattatcaacacttacaaacatgtaagtaactctct |
416 |
Q |
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|||||| | | ||||||||||| |||||| || | | || | || ||||| | |||||||||||||||||||| ||||| ||||| |
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| T |
51547107 |
tttagaaagcttagattctgcttcaggtacactgaagcaagttttagttgattcagtgatcaacacttacaaacatgttagtaattctct |
51547196 |
T |
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