View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5039_1D_low_10 (Length: 485)
Name: NF5039_1D_low_10
Description: NF5039_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_1D_low_10 |
 | |
|
| [»] scaffold0713 (1 HSPs) |
| | |
|
| [»] scaffold2168 (1 HSPs) |
| | |
|
| [»] scaffold0036 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 72 - 473
Target Start/End: Complemental strand, 47052243 - 47051842
Alignment:
| Q |
72 |
cataacttttcctttccattctcctctcactcccgttagctctctgtccctcattcctcttcttccatttcttaatccttcctttcccaaatcaatcatc |
171 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
47052243 |
cataactttccctttccattctcctctcactcccgttagctctctgtccctcattcctcttcttccatttctttttccttcctttcccaaatcaatcatc |
47052144 |
T |
|
| Q |
172 |
cttaagaataattgatcatctaagtaaagcaacttcatattcaagctctattggtagaattttgggggttagggtttgtgctttgaagtagaaggagaat |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47052143 |
cttaagaataattgatcatctaagtaaagcaacttcatattcaagctctattggtagaattttgggggttagggtttgtgctttgaagtagaaggagaat |
47052044 |
T |
|
| Q |
272 |
acccatattgtgagagttgctcattgagactctttgaagtatatttatcaacttacaattcaattagtgtttatttacacatgaagattcgtttagaaat |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
47052043 |
acccatattgtgagagttgctcattgagactctttgaggtatatttatcaacttacaattcaattagtgtttatttacacatgatgattcgtttagaaat |
47051944 |
T |
|
| Q |
372 |
tattttgtaggttagaatggataatatagggatttcatggttaactctagttagagaagtggtagaatgagtttctaattcatgagaaaatattattgat |
471 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47051943 |
tattttgtaggttagaatggataatatagggatttcatggttaactctagttagagaagtggtagaatgagtttctaattcatgagaaaatattattgat |
47051844 |
T |
|
| Q |
472 |
gt |
473 |
Q |
| |
|
|| |
|
|
| T |
47051843 |
gt |
47051842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 79 - 473
Target Start/End: Complemental strand, 19658195 - 19657778
Alignment:
| Q |
79 |
tttcctttccattctcctctcactcccgttagctctctgtccctcattcctcttcttccatttcttaatccttcctttcccaaatcaa------------ |
166 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
19658195 |
tttcctttcctttctcctctcactcccgttagctctctgtccctcaatcctcttcttccatttctttttccttcctttcccaaatcaaccaatttcatca |
19658096 |
T |
|
| Q |
167 |
---------tcatccttaagaataattgatcatctaagtaaagcaacttcatattcaagctctattggtagaattttgggggttagggtttgtgctttga |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
19658095 |
ccaaatcaatcatccttaagaataattgatcatctaagtaaagcaacttcatattcaagctctattggtagaaatttgggggttagggtttgtgctttga |
19657996 |
T |
|
| Q |
258 |
agtagaaggagaatacccatattgtgagagttgctcattgagactctttgaagtatatttatcaacttacaat--tcaattagtgtttatttacacatga |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
19657995 |
agtagaaggagaatacccatattgtgagagttgctcattgagactctttgaggtatatttatcgacttacaattctcaattagtgtttatttacacatga |
19657896 |
T |
|
| Q |
356 |
agattcgtttagaaattattttgtaggttagaatggataatatagggatttcatggttaactctagttagagaagtggtagaatgagtttctaattcatg |
455 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19657895 |
agattcgtttagaaattattttgtaggttagaatggataatgtagggattttatggttaactctagttagagaagtggtagaatgagtttctaattcatg |
19657796 |
T |
|
| Q |
456 |
agaaaatattattgatgt |
473 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
19657795 |
agaaaatattattgatgt |
19657778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 268 - 473
Target Start/End: Original strand, 14648945 - 14649151
Alignment:
| Q |
268 |
gaatacccatattgtgagagttgctcattgagact-ctttgaagtatatttatcaacttacaattcaattagtgtttatttacacatgaagattcgttta |
366 |
Q |
| |
|
|||||||||||| |||| ||||| ||||||||||| ||| || |||||||||||||||||||| |||||||||| |||||| |||||| | | ||| | |
|
|
| T |
14648945 |
gaatacccatatagtgaaagttgttcattgagacttcttcgaggtatatttatcaacttacaactcaattagtgcatatttagacatgattagttgtt-a |
14649043 |
T |
|
| Q |
367 |
gaaattattttgt-aggttagaatggataatatagggatttcatggttaactctagttagagaagtggtagaatgagtttctaattcatgagaaaatatt |
465 |
Q |
| |
|
||||||| ||| | || ||||| | ||| | | |||| || ||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
14649044 |
gaaattaatttttgagattagattagattgtttggggaatttgtggttaactatagttagagaagtagtagaatgagtttctaattcatgagagaatatt |
14649143 |
T |
|
| Q |
466 |
attgatgt |
473 |
Q |
| |
|
|||||||| |
|
|
| T |
14649144 |
attgatgt |
14649151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 268 - 473
Target Start/End: Original strand, 14658735 - 14658941
Alignment:
| Q |
268 |
gaatacccatattgtgagagttgctcattgagact-ctttgaagtatatttatcaacttacaattcaattagtgtttatttacacatgaagattcgttta |
366 |
Q |
| |
|
|||||||||||| |||| ||||| ||||||||||| ||| || |||||||||||||||||||| |||||||||| |||||| |||||| | | ||| | |
|
|
| T |
14658735 |
gaatacccatatagtgaaagttgttcattgagacttcttcgaggtatatttatcaacttacaactcaattagtgcatatttagacatgattagttgtt-a |
14658833 |
T |
|
| Q |
367 |
gaaattattttgt-aggttagaatggataatatagggatttcatggttaactctagttagagaagtggtagaatgagtttctaattcatgagaaaatatt |
465 |
Q |
| |
|
||||||| ||| | || ||||| | ||| | | |||| || ||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
14658834 |
gaaattaatttttgagattagattagattgtttggggaatttgtggttaactatagttagagaagtagtagaatgagtttctaattcatgagagaatatt |
14658933 |
T |
|
| Q |
466 |
attgatgt |
473 |
Q |
| |
|
|||||||| |
|
|
| T |
14658934 |
attgatgt |
14658941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 237 - 331
Target Start/End: Original strand, 34899484 - 34899578
Alignment:
| Q |
237 |
gggttagggtttgtgctttgaagtagaaggagaatacccatattgtgagagttgctcattgagactctttgaagtatatttatcaacttacaatt |
331 |
Q |
| |
|
|||||||||||||||| |||| | ||||| ||||||| ||| | ||| ||||||||||| ||||||||||| | ||||||||||||||||||| |
|
|
| T |
34899484 |
gggttagggtttgtgccttgaggaagaagaagaatactcatttgatgaaagttgctcattaagactctttgagatgtatttatcaacttacaatt |
34899578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 348
Target Start/End: Complemental strand, 29290505 - 29290457
Alignment:
| Q |
300 |
actctttgaagtatatttatcaacttacaattcaattagtgtttattta |
348 |
Q |
| |
|
|||| |||| |||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
29290505 |
actcattgaggtatatttatcaacttacccttcaattagtgtatattta |
29290457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 362; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 72 - 473
Target Start/End: Complemental strand, 4708195 - 4707795
Alignment:
| Q |
72 |
cataacttttcctttccattctcctctcactcccgttagctctctgtccctcattcctcttcttccatttcttaatccttcctttcccaaatcaatcatc |
171 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4708195 |
cataactttccctttccattctcctctcacttccgttagctctctgtccctcattcctcttcttccatttctttttccttcctttcccaaatcaatcatc |
4708096 |
T |
|
| Q |
172 |
cttaagaataattgatcatctaagtaaagcaacttcatattcaagctctattggtagaattttgggggttagggtttgtgctttgaagtagaaggagaat |
271 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4708095 |
cttaagaataattggtcatctaagtaaagcaacttcatattcaagctctatcggtagaattttgggggttagggtttgtgctttgaagtagaaggagaat |
4707996 |
T |
|
| Q |
272 |
acccatattgtgagagttgctcattgagactctttgaagtatatttatcaacttacaattcaattagtgtttatttacacatgaagattcgtttagaaat |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4707995 |
acccatattgtgagagttgctcattgagactctttgaggtatatttatcaacttacaattcaattagtgtttatttacacatgaagattcg-ttagaaat |
4707897 |
T |
|
| Q |
372 |
tattttgtaggttagaatggataatatagggatttcatggttaactctagttagagaagtggtagaatgagtttctaattcatgagaaaatattattgat |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4707896 |
tattttgtaggttagaatggataatatagggatttcatggttaactctagttagagaagtggtggaatgagtttctaattcatgagaaaatattattgat |
4707797 |
T |
|
| Q |
472 |
gt |
473 |
Q |
| |
|
|| |
|
|
| T |
4707796 |
gt |
4707795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 188 - 472
Target Start/End: Original strand, 15998265 - 15998546
Alignment:
| Q |
188 |
catctaagtaaagcaacttcatatt-caagctctattggtagaattttgggggttagggtttgtgctttgaagtagaaggagaatacccatattgtgaga |
286 |
Q |
| |
|
||||||| ||||| | |||||||| |||||||| |||||||||||||||||||||||| |||||||||| |||| |||||| |||||||| | | |
|
|
| T |
15998265 |
catctaatcaaagctatttcatattgcaagctctcatggtagaattttgggggttagggtgtgtgctttga---ggaagaagaatattcatattgtaaaa |
15998361 |
T |
|
| Q |
287 |
gttgctcattgagactctttgaa-gtatatttatcaacttacaattcaattagtgtttatttacacatgaagattcgtttagaaatt-attttgtaggtt |
384 |
Q |
| |
|
| | |||||||||||| ||||| ||||||||||||| |||||| ||||||||||| ||||||| ||||| | | ||||||||| ||| | || || |
|
|
| T |
15998362 |
ggttctcattgagacttcttgaaggtatatttatcaatttacaactcaattagtgtatatttacgcatga--ttactgttagaaattaattattgagatt |
15998459 |
T |
|
| Q |
385 |
agaatggataatatagggatttcatggttaactctagttagagaagtggtagaatgagtttctaattcatgagaaaatattattgatg |
472 |
Q |
| |
|
||| | ||| | || ||||||| || |||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15998460 |
agagtagatgaaatggggattttatcgttaac-attgttagagaagtagtagaatgagtttctaattcatgagaaaatattattgatg |
15998546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 274 - 472
Target Start/End: Complemental strand, 26918780 - 26918584
Alignment:
| Q |
274 |
ccatattgtgagagttgctcattgagact-ctttgaagtatatttatcaacttacaattcaattagtgtttatttacacatgaagattcgt-ttagaaat |
371 |
Q |
| |
|
||||| ||||| ||||| ||||| ||||| ||| || ||||||||||||| |||||| |||||||||| |||||| ||||| || || |||| ||| |
|
|
| T |
26918780 |
ccatactgtgaaagttgatcattaagacttcttggaggtatatttatcaatttacaactcaattagtgcatatttaggcatga---ttggtgttaggaat |
26918684 |
T |
|
| Q |
372 |
tattttgt-aggttagaatggataatatagggatttcatggttaactctagttagagaagtggtagaatgagtttctaattcatgagaaaatattattga |
470 |
Q |
| |
|
|| || | || ||||| | ||| |||| ||||||| ||||||||| |||||| |||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
26918683 |
taattattgagattagagtagatgatatggggattttatggttaaca-tagttatagaagtagtagaatgagtttctaattcatgagaaaa-attattga |
26918586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 72 - 473
Target Start/End: Original strand, 42783975 - 42784374
Alignment:
| Q |
72 |
cataacttttcctttccattctcctctcactcccgttagctctctgtccctcattcctcttcttccatttcttaatccttcctttcccaaatcaatcatc |
171 |
Q |
| |
|
||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
42783975 |
cataactttccctttccattctcct-tcacttccgttagctctctgtccctcattcctcttcttccatttctttttccttcctttcccaaatcaatcatc |
42784073 |
T |
|
| Q |
172 |
cttaagaataattgatcatctaagtaaagcaacttcatattcaagctctattggtagaattttgggggttagggtttgtgctttgaagtagaaggagaat |
271 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42784074 |
cttaagaataattggtcatctaagtaaagcaacttcatattcaagctctattggtagaattttgggggttagggtttgtgctttgaagtagaaggagaat |
42784173 |
T |
|
| Q |
272 |
acccatattgtgagagttgctcattgagactctttgaagtatatttatcaacttacaattcaattagtgtttatttacacatgaagattcgtttagaaat |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
42784174 |
acccatattgtgagagttgctcattgagactctttgaggtatatttatcaacttacaattcaattagtgtttatttacacatgaagattcg-ttagaaat |
42784272 |
T |
|
| Q |
372 |
tattttgtaggttagaatggataatatagggatttcatggttaactctagttagagaagtggtagaatgagtttctaattcatgagaaaatattattgat |
471 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42784273 |
tattttgtaggttagaatggataatatagggatttcatggttaactctagttagagaagtggtagaatgagtttctaattcatgagaaaatattattgat |
42784372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 421 - 469
Target Start/End: Complemental strand, 5520790 - 5520742
Alignment:
| Q |
421 |
gttagagaagtggtagaatgagtttctaattcatgagaaaatattattg |
469 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5520790 |
gttagagaagtagtagaatgattttctaattcatgagaaaatattattg |
5520742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 436 - 472
Target Start/End: Complemental strand, 27199653 - 27199617
Alignment:
| Q |
436 |
gaatgagtttctaattcatgagaaaatattattgatg |
472 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
27199653 |
gaatgagtttctaattcatgagagaatattattgatg |
27199617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 355
Target Start/End: Complemental strand, 5520896 - 5520832
Alignment:
| Q |
291 |
ctcattgagactctttgaagtatatttatcaacttacaattcaattagtgtttatttacacatga |
355 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||| ||||||||||| |||||| |||||| |
|
|
| T |
5520896 |
ctcattgaggttctttgaggtatatttatcaacttatctttcaattagtgcatatttagacatga |
5520832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 82 - 473
Target Start/End: Complemental strand, 810379 - 809988
Alignment:
| Q |
82 |
cctttccattctcctctcactcccgttagctctctgtccctcattcctcttcttccatttcttaatccttcctttcccaaatcaatcatccttaagaata |
181 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
810379 |
cctttccattctcctctcacttccgttagctctctgtccctcattcctcttcttccatttctttttccttcctttcccaaatcaatcatccttaagaata |
810280 |
T |
|
| Q |
182 |
attgatcatctaagtaaagcaacttcatattcaagctctattggtagaattttgggggttagggtttgtgctttgaagtagaaggagaatacccatattg |
281 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
810279 |
attggtcatctaagtaaagcaacttcatattcaagctctattggtagaattttgggggttagggtttgtgctttgaagtagaaggagaatacccatattg |
810180 |
T |
|
| Q |
282 |
tgagagttgctcattgagactctttgaagtatatttatcaacttacaattcaattagtgtttatttacacatgaagattcgtttagaaattattttgtag |
381 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
810179 |
tgagagttgctcattgagactccctgaggtatatttatcaacttacaattcaattagtgtttatttacacatgaagattcgtttagaaattattttgttg |
810080 |
T |
|
| Q |
382 |
gttagaatggataatatagggatttcatggttaactctagttagagaagtggtagaatgagtttctaattcatgagaaaatattattgatgt |
473 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
810079 |
gttagaatggataatatagggatttcatggttaactctagttagagaagtggtagaatgagtttctaattcatgagaaaatattattgatgt |
809988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 72 - 473
Target Start/End: Original strand, 27560634 - 27561058
Alignment:
| Q |
72 |
cataacttttcctttccattctcctctcactcccgttagctctctgtccctcattcctcttcttccatttcttaatccttcctttcccaa---------- |
161 |
Q |
| |
|
||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
27560634 |
cataactttccctttcctttctcctatcactcccgttagctctctgtccctcattcctcttcttccatttctttttccttcctttcccaaatcaaccaat |
27560733 |
T |
|
| Q |
162 |
-----------atcaatcatccttaagaataattgatcatctaagtaaagcaacttcatattcaagctctattggtagaattttgggggttagggtttgt |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
27560734 |
ttcatcaccaaatcaatcatccttaagaataattgatcatctaagtaaagcaacttcatattcaagctctattggtataaatttgggggttagggtttgt |
27560833 |
T |
|
| Q |
251 |
gctttgaagtagaaggagaatacccatattgtgagagttgctcattgagactctttgaagtatatttatcaacttacaat--tcaattagtgtttattta |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
27560834 |
gctttgaagtagaaggagaatacccatattgtgagagttgctcattgagactctttgaggtatatttatcgacttacaattctcaattagtgtttattta |
27560933 |
T |
|
| Q |
349 |
cacatgaagattcgtttagaaattattttgtaggttagaatggataatatagggatttcatggttaactctagttagagaagtggtagaatgagtttcta |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27560934 |
cacatgaagattcgtttagaaattattttgtaggttagaatgaataatgtagggattttatggttaactctagttagagaagtggtagaatgagtttcta |
27561033 |
T |
|
| Q |
449 |
attcatgagaaaatattattgatgt |
473 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
27561034 |
attcatgagaaaatattattgatgt |
27561058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 72 - 473
Target Start/End: Original strand, 37457075 - 37457499
Alignment:
| Q |
72 |
cataacttttcctttccattctcctctcactcccgttagctctctgtccctcattcctcttcttccatttcttaatccttcctttcccaa---------- |
161 |
Q |
| |
|
||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
37457075 |
cataactttccctttcctttctcctatcactcccgttagctctctgtccctcattcctcttcttccatttctttttccttcctttcccaaatcaaccaat |
37457174 |
T |
|
| Q |
162 |
-----------atcaatcatccttaagaataattgatcatctaagtaaagcaacttcatattcaagctctattggtagaattttgggggttagggtttgt |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
37457175 |
tttatcaccaaatcaatcatccttaagaataattgatcatctaagtaaagcaacttcatattcaagctctattggtataaatttgggggttagggtttgt |
37457274 |
T |
|
| Q |
251 |
gctttgaagtagaaggagaatacccatattgtgagagttgctcattgagactctttgaagtatatttatcaacttacaat--tcaattagtgtttattta |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
37457275 |
gctttgaagtagaaggagaatacccatattgtgagagttgctcattgagactctttgaggtatatttatcgacttacaattctcaattagtgtttattta |
37457374 |
T |
|
| Q |
349 |
cacatgaagattcgtttagaaattattttgtaggttagaatggataatatagggatttcatggttaactctagttagagaagtggtagaatgagtttcta |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37457375 |
cacatgaagattcgtttagaaattattttgtaggttagaatgtataatgtagggattttatggttaactctagttagagaagtggtagaatgagtttcta |
37457474 |
T |
|
| Q |
449 |
attcatgagaaaatattattgatgt |
473 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
37457475 |
attcatgagaaaatattattgatgt |
37457499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 270 - 355
Target Start/End: Original strand, 45330429 - 45330514
Alignment:
| Q |
270 |
atacccatattgtgagagttgctcattgagactctttgaagtatatttatcaacttacaattcaattagtgtttatttacacatga |
355 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||| | |||||||||||||||| || ||||||||||| |||||| |||||| |
|
|
| T |
45330429 |
atacccattttgtgaaggttgctcattgagactctttaaggtatatttatcaacttgcatttcaattagtgcatatttagacatga |
45330514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 421 - 473
Target Start/End: Original strand, 44314709 - 44314761
Alignment:
| Q |
421 |
gttagagaagtggtagaatgagtttctaattcatgagaaaatattattgatgt |
473 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
44314709 |
gttaaagaagtagtagaatgagtttctaattcataagaaaatattattgatgt |
44314761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 421 - 473
Target Start/End: Original strand, 44322888 - 44322940
Alignment:
| Q |
421 |
gttagagaagtggtagaatgagtttctaattcatgagaaaatattattgatgt |
473 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
44322888 |
gttaaagaagtagtagaatgagtttctaattcataagaaaatattattgatgt |
44322940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 269 - 355
Target Start/End: Original strand, 31712745 - 31712831
Alignment:
| Q |
269 |
aatacccatattgtgagagttgctcattgagactctttgaagtatatttatcaacttacaattcaattagtgtttatttacacatga |
355 |
Q |
| |
|
||||||||| |||||| |||||||||||||||| ||| | ||||||||||||||||| | |||||||| || |||||| |||||| |
|
|
| T |
31712745 |
aatacccattttgtgaaggttgctcattgagactttttaaggtatatttatcaacttatatttcaattaatgcatatttagacatga |
31712831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 269 - 355
Target Start/End: Complemental strand, 39156366 - 39156280
Alignment:
| Q |
269 |
aatacccatattgtgagagttgctcattgagactctttgaagtatatttatcaacttacaattcaattagtgtttatttacacatga |
355 |
Q |
| |
|
||||||||| |||||| |||||||||||||||| ||| | ||||||||||||||||| | |||||||| || |||||| |||||| |
|
|
| T |
39156366 |
aatacccattttgtgaaggttgctcattgagactttttaaggtatatttatcaacttatatttcaattaatgcatatttagacatga |
39156280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 348
Target Start/End: Original strand, 10414571 - 10414617
Alignment:
| Q |
302 |
tctttgaagtatatttatcaacttacaattcaattagtgtttattta |
348 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
10414571 |
tctttgaggtatatttatcaacttacctttcaattagtgtatattta |
10414617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 72 - 473
Target Start/End: Complemental strand, 5735992 - 5735591
Alignment:
| Q |
72 |
cataacttttcctttccattctcctctcactcccgttagctctctgtccctcattcctcttcttccatttcttaatccttcctttcccaaatcaatcatc |
171 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||| |
|
|
| T |
5735992 |
cataactttccctttcctttctcctctcactcccgttatctctctgtccctcattcctcttcttctatttctttttccttcctttcccaaatcaaccatc |
5735893 |
T |
|
| Q |
172 |
cttaagaataattgatcatctaagtaaagcaacttcatattcaagctctattggtagaattttgggggttagggtttgtgctttgaagtagaaggagaat |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5735892 |
cttaagaataattgatcatctaagtaaagcaacttcatattcaagctctattggtagaaatttgggggttagggtttgtgctttgaagtaataggagaat |
5735793 |
T |
|
| Q |
272 |
acccatattgtgagagttgctcattgagactctttgaagtatatttatcaacttacaattcaattagtgtttatttacacatgaagattcgtttagaaat |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5735792 |
acccatattgtgagagttgctcattgagactctttgaggtatatttataaacatacaattcaattagtgtttatttacacatgaagattcgtttagaaat |
5735693 |
T |
|
| Q |
372 |
tattttgtaggttagaatggataatatagggatttcatggttaactctagttagagaagtggtagaatgagtttctaattcatgagaaaatattattgat |
471 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5735692 |
tattttgtaggttagaatggataatgtagggattttgtggttaactctagttagagaagtggtagaatgagtttctaattcatgagaaaatattattgat |
5735593 |
T |
|
| Q |
472 |
gt |
473 |
Q |
| |
|
|| |
|
|
| T |
5735592 |
gt |
5735591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 72 - 473
Target Start/End: Complemental strand, 5773104 - 5772703
Alignment:
| Q |
72 |
cataacttttcctttccattctcctctcactcccgttagctctctgtccctcattcctcttcttccatttcttaatccttcctttcccaaatcaatcatc |
171 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||| |
|
|
| T |
5773104 |
cataactttccctttcctttctcctctcactcccgttatctctctgtccctcattcctcttcttctatttctttttccttcctttcccaaatcaaccatc |
5773005 |
T |
|
| Q |
172 |
cttaagaataattgatcatctaagtaaagcaacttcatattcaagctctattggtagaattttgggggttagggtttgtgctttgaagtagaaggagaat |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5773004 |
cttaagaataattgatcatctaagtaaagcaacttcatattcaagctctattggtagaaatttgggggttagggtttgtgctttgaagtaataggagaat |
5772905 |
T |
|
| Q |
272 |
acccatattgtgagagttgctcattgagactctttgaagtatatttatcaacttacaattcaattagtgtttatttacacatgaagattcgtttagaaat |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5772904 |
acccatattgtgagagttgctcattgagactctttgaggtatatttataaacatacaattcaattagtgtttatttacacatgaagattcgtttagaaat |
5772805 |
T |
|
| Q |
372 |
tattttgtaggttagaatggataatatagggatttcatggttaactctagttagagaagtggtagaatgagtttctaattcatgagaaaatattattgat |
471 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5772804 |
tattttgtaggttagaatggataatgtagggattttgtggttaactctagttagagaagtggtagaatgagtttctaattcatgagaaaatattattgat |
5772705 |
T |
|
| Q |
472 |
gt |
473 |
Q |
| |
|
|| |
|
|
| T |
5772704 |
gt |
5772703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 288 - 340
Target Start/End: Original strand, 7688223 - 7688276
Alignment:
| Q |
288 |
ttgctcattgagactcttt-gaagtatatttatcaacttacaattcaattagtg |
340 |
Q |
| |
|
||||||||||||| | ||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
7688223 |
ttgctcattgagatttttttgaagtatatttatcaacttacatttcaattagtg |
7688276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 72 - 473
Target Start/End: Complemental strand, 5743266 - 5742842
Alignment:
| Q |
72 |
cataacttttcctttccattctcctctcactcccgttagctctctgtccctcattcctcttcttccatttcttaatccttcctttcccaaatcaa----- |
166 |
Q |
| |
|
||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5743266 |
cataactttccctttcctttctcctatcactcccgttagctctctgtccctcattcctcttcttccatttctttttccttcctttcccaaatcaaccaat |
5743167 |
T |
|
| Q |
167 |
----------------tcatccttaagaataattgatcatctaagtaaagcaacttcatattcaagctctattggtagaattttgggggttagggtttgt |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
5743166 |
tttatcaccaaatcaatcatccttaagaataattgatcatctaagtaaagcaacttcatattcaagctctattggtataaatttgggggttagggtttgt |
5743067 |
T |
|
| Q |
251 |
gctttgaagtagaaggagaatacccatattgtgagagttgctcattgagactctttgaagtatatttatcaacttacaat--tcaattagtgtttattta |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
5743066 |
gctttgaagtagaaggagaatacccatattgtgagagttgctcattgagactctttgaggtatatttatcgacttacaattctcaattagtgtttattta |
5742967 |
T |
|
| Q |
349 |
cacatgaagattcgtttagaaattattttgtaggttagaatggataatatagggatttcatggttaactctagttagagaagtggtagaatgagtttcta |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5742966 |
cacatgaagattcgtttagaaattattttgtaggttagaatgaataatgtagggattttatggttaactctagttagagaagtggtagaatgagtttcta |
5742867 |
T |
|
| Q |
449 |
attcatgagaaaatattattgatgt |
473 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
5742866 |
attcatgagaaaatattattgatgt |
5742842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0713 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0713
Description:
Target: scaffold0713; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 268 - 473
Target Start/End: Original strand, 3775 - 3982
Alignment:
| Q |
268 |
gaatacccatattgtgagagttgctcattgagact-ctttgaagtatatttatcaacttacaattcaattagtgtttatttacacatgaagattcgttta |
366 |
Q |
| |
|
|||||||||||| |||| ||||| ||||||||||| ||| || |||||||||||||||||||| |||||||||| |||||| |||||| | | ||| | |
|
|
| T |
3775 |
gaatacccatatagtgaaagttgttcattgagacttcttggaggtatatttatcaacttacaactcaattagtgcatatttagacatgattagttgtt-a |
3873 |
T |
|
| Q |
367 |
gaaattattttgt--aggttagaatggataatatagggatttcatggttaactctagttagagaagtggtagaatgagtttctaattcatgagaaaatat |
464 |
Q |
| |
|
||||||| ||| | || ||||| | ||| | | |||| || ||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
3874 |
gaaattaattttttgagattagagtagattgtttggggaatttgtggttaactatagttagagaagtagtagaatgagtttctaattcatgagagaatat |
3973 |
T |
|
| Q |
465 |
tattgatgt |
473 |
Q |
| |
|
||||||||| |
|
|
| T |
3974 |
tattgatgt |
3982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 268 - 473
Target Start/End: Original strand, 27525906 - 27526113
Alignment:
| Q |
268 |
gaatacccatattgtgagagttgctcattgagact-ctttgaagtatatttatcaacttacaattcaattagtgtttatttacacatgaagattcgttta |
366 |
Q |
| |
|
|||||||||||| |||| ||||| ||||||||||| ||| || |||||||||||||||||||| |||||||||| |||||| |||||| | | ||| | |
|
|
| T |
27525906 |
gaatacccatatagtgaaagttgttcattgagacttcttggaggtatatttatcaacttacaactcaattagtgcatatttagacatgattagttgtt-a |
27526004 |
T |
|
| Q |
367 |
gaaattattttgt--aggttagaatggataatatagggatttcatggttaactctagttagagaagtggtagaatgagtttctaattcatgagaaaatat |
464 |
Q |
| |
|
||||||| ||| | || ||||| | ||| | | |||| || ||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
27526005 |
gaaattaattttttgagattagagtagattgtttggggaatttgtggttaactatagttagagaagtagtagaatgagtttctaattcatgagagaatat |
27526104 |
T |
|
| Q |
465 |
tattgatgt |
473 |
Q |
| |
|
||||||||| |
|
|
| T |
27526105 |
tattgatgt |
27526113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 269 - 355
Target Start/End: Complemental strand, 13143724 - 13143638
Alignment:
| Q |
269 |
aatacccatattgtgagagttgctcattgagactctttgaagtatatttatcaacttacaattcaattagtgtttatttacacatga |
355 |
Q |
| |
|
||||||||| || ||| |||||||||||||||||||| | ||||||||||||||||||| ||||||||||| |||||| |||||| |
|
|
| T |
13143724 |
aatacccattttatgaaggttgctcattgagactctttaaggtatatttatcaacttacatttcaattagtgcatatttagacatga |
13143638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 269 - 355
Target Start/End: Original strand, 17354278 - 17354364
Alignment:
| Q |
269 |
aatacccatattgtgagagttgctcattgagactctttgaagtatatttatcaacttacaattcaattagtgtttatttacacatga |
355 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||| | ||||||||||||||||| | ||||||||||| |||||| |||||| |
|
|
| T |
17354278 |
aatacccattttgtgaaggttgctcattgagactctttaaggtatatttatcaacttatatttcaattagtgcatatttagacatga |
17354364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 421 - 473
Target Start/End: Original strand, 22012782 - 22012834
Alignment:
| Q |
421 |
gttagagaagtggtagaatgagtttctaattcatgagaaaatattattgatgt |
473 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
22012782 |
gttaaagaagtagtagaatgagtttctaattcataagaaaatattattgatgt |
22012834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 269 - 355
Target Start/End: Original strand, 27682893 - 27682979
Alignment:
| Q |
269 |
aatacccatattgtgagagttgctcattgagactctttgaagtatatttatcaacttacaattcaattagtgtttatttacacatga |
355 |
Q |
| |
|
||||||||| |||||| |||||||||||||||| ||| | ||||||||||||||||| | |||||||| || |||||| |||||| |
|
|
| T |
27682893 |
aatacccattttgtgaaggttgctcattgagactttttaaggtatatttatcaacttatatttcaattaatgcatatttagacatga |
27682979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 269 - 355
Target Start/End: Original strand, 27690214 - 27690300
Alignment:
| Q |
269 |
aatacccatattgtgagagttgctcattgagactctttgaagtatatttatcaacttacaattcaattagtgtttatttacacatga |
355 |
Q |
| |
|
||||||||| |||||| |||||||||||||||| ||| | ||||||||||||||||| | |||||||| || |||||| |||||| |
|
|
| T |
27690214 |
aatacccattttgtgaaggttgctcattgagactttttaaggtatatttatcaacttatatttcaattaatgcatatttagacatga |
27690300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 269 - 355
Target Start/End: Complemental strand, 30230071 - 30229985
Alignment:
| Q |
269 |
aatacccatattgtgagagttgctcattgagactctttgaagtatatttatcaacttacaattcaattagtgtttatttacacatga |
355 |
Q |
| |
|
||||||||| |||||| |||||||||||||||| ||| | ||||||||||||||||| | |||||||| || |||||| |||||| |
|
|
| T |
30230071 |
aatacccattttgtgaaggttgctcattgagactttttaaggtatatttatcaacttatatttcaattaatgcatatttagacatga |
30229985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 473
Target Start/End: Complemental strand, 25479584 - 25479532
Alignment:
| Q |
421 |
gttagagaagtggtagaatgagtttctaattcatgagaaaatattattgatgt |
473 |
Q |
| |
|
||||||||||| ||| | |||||||||||||| | ||||||||| |||||||| |
|
|
| T |
25479584 |
gttagagaagttgtatagtgagtttctaattcttaagaaaatatcattgatgt |
25479532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 238 - 472
Target Start/End: Original strand, 34378027 - 34378262
Alignment:
| Q |
238 |
ggttagggtttgtgctttgaagtagaaggagaatacccatattgtgagagttgctcattgagactctttgaag-tatatttatcaacttacaattcaatt |
336 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||| ||| ||||||||||| | ||| ||||||| |||||||||||| |||||| | |||| |
|
|
| T |
34378027 |
ggttagggtttgtgctttgggaaagaagaggaatacccatatgatgaaagttgctcattaaaactttttgaaggtatatttatcaatttacaacttaatt |
34378126 |
T |
|
| Q |
337 |
agtgtttatttacacatgaagattcgtttagaaattattttgt-aggttagaatggataatatagggatttcatggttaactctagttagagaagtggta |
435 |
Q |
| |
|
| || |||||| || ||| | | ||||||| ||| ||| | || ||||| | ||| |||| |||||| |||||||| | ||||||||||||| ||| |
|
|
| T |
34378127 |
aatgcatatttatacttgattagtt-tttagaatttaatttttgagattagagtagatgatatggggattgtatggttaaatatagttagagaagtagta |
34378225 |
T |
|
| Q |
436 |
gaatgagtttctaattcatgagaaaatattattgatg |
472 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34378226 |
gaatgagtttctaattcatgagaaaatattattgatg |
34378262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 232 - 472
Target Start/End: Original strand, 28802220 - 28802456
Alignment:
| Q |
232 |
tttgggggttagggtttgtgctttgaagtagaaggagaatacccatattgtgagagttgctcattgagactctttgaag-tatatttatcaacttacaat |
330 |
Q |
| |
|
||||||||||||||| |||||||||| | ||||| |||||||||||||| | || | |||||||||||| |||||| |||||||||||| | |||| |
|
|
| T |
28802220 |
tttgggggttagggtgtgtgctttgaggaagaag---aatacccatattgtaaaaggttctcattgagacttcttgaaggtatatttatcaattgacaac |
28802316 |
T |
|
| Q |
331 |
tcaattagtgtttatttacacatgaagattcgt-ttagaaattattttgt-aggttagaatggataatatagggatttcatggttaactctagttagaga |
428 |
Q |
| |
|
||||||||||| |||||| ||||| || || |||||||||| || | || ||||| | ||| | || ||||||| || |||||| | |||||||| |
|
|
| T |
28802317 |
tcaattagtgtatatttaggcatga---ttagtgttagaaattaattattgagattagagtagatgaaatggggattttatcgttaacatt-gttagaga |
28802412 |
T |
|
| Q |
429 |
agtggtagaatgagtttctaattcatgagaaaatattattgatg |
472 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28802413 |
agtagtagaatgagtttctaattcatgagaaaatattattgatg |
28802456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 222 - 348
Target Start/End: Complemental strand, 6023969 - 6023844
Alignment:
| Q |
222 |
ttggtagaattttgggggttagggtttgtgctttgaagtagaaggagaatacccatattgtgagagttgctcattgagactctttgaagtatatttatca |
321 |
Q |
| |
|
||||||| ||||||||| |||||||||||| |||||| |||| | |||| |||| |||||| ||| | ||||||||||||||||| |||||||||||| |
|
|
| T |
6023969 |
ttggtaggattttgggg-ttagggtttgtgttttgaataggaagaaaaatatccatcttgtgaaagtcgttcattgagactctttgaggtatatttatca |
6023871 |
T |
|
| Q |
322 |
acttacaattcaattagtgtttattta |
348 |
Q |
| |
|
||||||| |||||||||||| |||||| |
|
|
| T |
6023870 |
acttacatttcaattagtgtatattta |
6023844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2168 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold2168
Description:
Target: scaffold2168; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 421 - 473
Target Start/End: Original strand, 10 - 62
Alignment:
| Q |
421 |
gttagagaagtggtagaatgagtttctaattcatgagaaaatattattgatgt |
473 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
10 |
gttaaagaagtagtagaatgagtttctaattcataagaaaatattattgatgt |
62 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 472
Target Start/End: Complemental strand, 33002 - 32893
Alignment:
| Q |
362 |
gtttagaaattattttgtaggttagaatggataatatagggatttcatggttaactctagttagagaagtggtagaatgagtttctaattcatgagaaaa |
461 |
Q |
| |
|
|||||||||||||||| |||| | ||| ||||| || ||||||| || ||| || ||||||||||||| ||||| ||||||||||| || ||| ||| |
|
|
| T |
33002 |
gtttagaaattattttagaggtaataatagataaaattgggattttataatta-ctatagttagagaagttgtagagtgagtttctaaatcttgactaaa |
32904 |
T |
|
| Q |
462 |
tattattgatg |
472 |
Q |
| |
|
||||||||||| |
|
|
| T |
32903 |
tattattgatg |
32893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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