View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_1D_low_16 (Length: 358)
Name: NF5039_1D_low_16
Description: NF5039_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_1D_low_16 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 5796191 - 5795834
Alignment:
| Q |
1 |
gtaacaaatttaactaaagcatttgcgccttcggttgctccatctgcgtcgctagataattttcatcaaggtaatattatcttctcctactattctaatt |
100 |
Q |
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| T |
5796191 |
gtaacaaatttaactaaagcatttgcgccttcggttgctccatctgcgtcgctagataattttcatcaaggtaatattatcttctcctactattctaatt |
5796092 |
T |
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| Q |
101 |
ttatttcaagtatatacagagacatcatgtttaaacatggatagcttatattatcgctaacgagtaacgactaatctcctatgattgaacgtgcaggtga |
200 |
Q |
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| T |
5796091 |
ttatttcaagtatatacagagacatcacgtttaaacatggatagcttatattatcactaatgagtaacgactaatctcctatgattgaatgtgcaggtga |
5795992 |
T |
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| Q |
201 |
acttcaaattgctcaaataacaatagccatttcatttaacacgagctacacggatatgcagccttacattacaaagttagctggactcatagctcatgag |
300 |
Q |
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| T |
5795991 |
actccaaattgctcaaataacaatagccatttcatttaacacgagctacacggatatgcagccttacattacaaagttagctggattcatagctcatgag |
5795892 |
T |
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| Q |
301 |
ttagatgttaatacatcacaggttagaaaatggtcatcaaagtgcaggaaatattggt |
358 |
Q |
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| T |
5795891 |
ttagatgttaatacatcacaggttagaaaatggtcatcaaagtgcaggaaatattggt |
5795834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 194 - 331
Target Start/End: Original strand, 39689925 - 39690062
Alignment:
| Q |
194 |
caggtgaacttcaaattgctcaaataacaatagccatttcatttaacacgagctacacggatatgcagccttacattacaaagttagctggactcatagc |
293 |
Q |
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|||||||| | ||||| || |||||||||||||| |||||||||| | |||||| |||||| ||||| | ||||| | || |||||||||||||| |
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| T |
39689925 |
caggtgaattccaaatcgcacaaataacaatagcagtttcatttaatatcagctacgatgatatgaagcctcgccttacagaattggctggactcatagc |
39690024 |
T |
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| Q |
294 |
tcatgagttagatgttaatacatcacaggttagaaaat |
331 |
Q |
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| T |
39690025 |
tcacgagttaaatgttaatacttcccaggttagaaaat |
39690062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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