View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_1D_low_18 (Length: 329)
Name: NF5039_1D_low_18
Description: NF5039_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_1D_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 99; Significance: 8e-49; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 24 - 221
Target Start/End: Complemental strand, 13614849 - 13614652
Alignment:
| Q |
24 |
ccaatagcattagggatttgaagaagattgcagaaacttatgtccaggtattgcaaacatgacagacgagacaatgaaggcagcaataaaccaactgaat |
123 |
Q |
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| T |
13614849 |
ccaatagcatcagggatttgaagaagattgcagaaacttatgtcaagaaattgcaaatatgaaaaatgagacaatgaaggcaacaataaaccaattgaat |
13614750 |
T |
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| Q |
124 |
cttcacgctttcgacaattcaaaaatcgaaag-gacggctttaggactctgtggatgcaggatgttgactggtattgggtagtactttccttgttatca |
221 |
Q |
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| T |
13614749 |
cttctcgctttcgaaaaattgaaaatccaaagtgac-gctttagaactttgtggatgcaggaagttgattggtattgggtagtactttctttgttatca |
13614652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 275 - 322
Target Start/End: Original strand, 20770444 - 20770491
Alignment:
| Q |
275 |
tatttgttggttggtctgtcatcgttataattgtcctcagaataatct |
322 |
Q |
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| T |
20770444 |
tatttgttggttggtctgtcatcgttataattgtcctcagaataatct |
20770491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 24 - 238
Target Start/End: Complemental strand, 31247079 - 31246865
Alignment:
| Q |
24 |
ccaatagcattagggatttgaagaagattgcagaaacttatgtccaggtattgcaaacatgacagacgagacaatgaaggcagcaataaaccaactgaat |
123 |
Q |
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| T |
31247079 |
ccaattgcattagggatttgaaaaagattgcagaaacttaggtcaagatattgcagacatgacagacaagacaacgaaggcaacaataaaccaaccgaat |
31246980 |
T |
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| Q |
124 |
cttcacgctttcgacaattcaaaaatcgaaaggacggctttaggactctgtggatgcaggatgttgactggtattgggtagtactttccttgttatcaag |
223 |
Q |
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| T |
31246979 |
cttcgcgttttcgaaaaaaagaaaatggaaagtgcggctttagaactttgtagatgaaggatgttggttggtattgagtagtacattctttaatatcaag |
31246880 |
T |
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| Q |
224 |
catctccgaatgttc |
238 |
Q |
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| T |
31246879 |
catctccaaatgttc |
31246865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 101
Target Start/End: Complemental strand, 31212668 - 31212591
Alignment:
| Q |
24 |
ccaatagcattagggatttgaagaagattgcagaaacttatgtccaggtattgcaaacatgacagacgagacaatgaa |
101 |
Q |
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| T |
31212668 |
ccaattgcattagggacttgaagaagattgcagaaacttaggtcaagagtttgcaagcatgacatactagataatgaa |
31212591 |
T |
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