View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_1D_low_21 (Length: 304)
Name: NF5039_1D_low_21
Description: NF5039_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_1D_low_21 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 24491643 - 24491863
Alignment:
| Q |
1 |
ggcttttaaattaagagatactagtattattaagcatttaagatgagagttattctgtgatcaagaaataatatcacactgtaattgattagagaaagtc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24491643 |
ggcttttaaattaagagatactagtattattaagcatttaagatgagagttaatctgtgatcaagaaataatatcacactgtaattgattagagaaagtc |
24491742 |
T |
|
| Q |
101 |
aaaccatagctgtaggaagcaattattaggacagcaaatatgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaaatcattattcct |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24491743 |
aaaccatagctgtaggaagcaattattaggacaacaaatatgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaaatcattattcct |
24491842 |
T |
|
| Q |
201 |
tacatatcattattccttata |
221 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
24491843 |
tacatatcattattccttata |
24491863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 24495201 - 24495421
Alignment:
| Q |
1 |
ggcttttaaattaagagatactagtattattaagcatttaagatgagagttattctgtgatcaagaaataatatcacactgtaattgattagagaaagtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24495201 |
ggcttttaaattaagagatactagtattattaagcatttaagatgagagttaatctgtgatcaagaaataatatcacactgtaattgattagagaaagtc |
24495300 |
T |
|
| Q |
101 |
aaaccatagctgtaggaagcaattattaggacagcaaatatgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaaatcattattcct |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24495301 |
aaaccatagctgtaggaagcaattattaggacaacaaatatgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaaatcattattcct |
24495400 |
T |
|
| Q |
201 |
tacatatcattattccttata |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
24495401 |
tacatatcattattccttata |
24495421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 28 - 173
Target Start/End: Original strand, 2810226 - 2810371
Alignment:
| Q |
28 |
tattaagcatttaagatgagagttattctgtgatcaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattatt |
127 |
Q |
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|||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2810226 |
tattaagcattttagacgagagttattctgtgattaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctctaggaagcaattatt |
2810325 |
T |
|
| Q |
128 |
aggacagcaaatatgtttctatatattgtgccaatataccttgtga |
173 |
Q |
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|||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
2810326 |
aggacaacaaatatgtttctatatattgtaccaatataccttgtga |
2810371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 24358956 - 24359176
Alignment:
| Q |
1 |
ggcttttaaattaagagatactagtattattaagcatttaagatgagagttattctgtgatcaagaaataatatcacactgtaattgattagagaaagtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24358956 |
ggcttttaaattaagagatactagtattattaagcatttaagatgagagttaatctgtgatcaagaaataatatcacactgtaattgattagagaaagtc |
24359055 |
T |
|
| Q |
101 |
aaaccatagctgtaggaagcaattattaggacagcaaatatgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaaatcattattcct |
200 |
Q |
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|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24359056 |
aaaccatagctgtaggaagcaattattaggacaacaaatatgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaaatcattattcct |
24359155 |
T |
|
| Q |
201 |
tacatatcattattccttata |
221 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
24359156 |
tacatatcattattccttata |
24359176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 28 - 222
Target Start/End: Original strand, 86729 - 86922
Alignment:
| Q |
28 |
tattaagcatttaagatgagagttattctgtgatcaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattatt |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
86729 |
tattaagcatttaagatgagagttattctgtgatcaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattatt |
86828 |
T |
|
| Q |
128 |
aggacagcaaatatgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaaatcattattccttacatatcattattccttatac |
222 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
86829 |
aggacagcaaatatgtttctatatattgtgccaaaataccttgtgaatgatatagc-aaaaatcattattccttatatatcattattccttatac |
86922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 18556791 - 18556573
Alignment:
| Q |
1 |
ggcttttaaattaagagatactagtattattaagcatttaagatgagagttattctgtgatcaagaaataatatcacactgtaattgattagagaaagtc |
100 |
Q |
| |
|
|||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
18556791 |
ggcttttaaattaagagatattc-tagtattaagcatttaagatgagagttattctgtgatcaagaaataatatcacactataattgactagagaaagtc |
18556693 |
T |
|
| Q |
101 |
aaaccatagctgtaggaagcaattattaggacagcaaatatgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaaatcattattcct |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
18556692 |
aaaccatagctggaggaagcaattattaggacagcaaatatgtttctatatattgtaccaatataccttgtgaatgatatagca-aaaatcattattcca |
18556594 |
T |
|
| Q |
201 |
tacatatcattattccttata |
221 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
18556593 |
tacatatcattattccttata |
18556573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 222 - 298
Target Start/End: Original strand, 22684888 - 22684964
Alignment:
| Q |
222 |
cttacagttgtccaaattgctatctgtgatgcatataactttttgggcatgtttaaggtaaactgggattcagtttt |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
22684888 |
cttacagttgtccaaattgctatctgtgatgcatataactctttgggcatgtttaaggtaaactgggattcaatttt |
22684964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 222 - 298
Target Start/End: Original strand, 22697011 - 22697087
Alignment:
| Q |
222 |
cttacagttgtccaaattgctatctgtgatgcatataactttttgggcatgtttaaggtaaactgggattcagtttt |
298 |
Q |
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||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
22697011 |
cttacagttgtccaagttgctatctttgatgcatataactctttgggcatgtttaaggtaaactgggattcagtttt |
22697087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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