View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_1D_low_23 (Length: 285)
Name: NF5039_1D_low_23
Description: NF5039_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_1D_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 7e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 107 - 281
Target Start/End: Original strand, 2689497 - 2689671
Alignment:
| Q |
107 |
atgctcttccaaacacctcaagatcatgatcttccttttggtaacagggaatgatactcttgtggctaacagccatgatcccacaagcaagacctcctcc |
206 |
Q |
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| T |
2689497 |
atgctcttccaaacacctcaagatcatgatcttccttttggtaacagggaatgatactcttgtggctaacagccatgatcccacaagcaagacctcctcc |
2689596 |
T |
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| Q |
207 |
ttgtattcctgcaactgaaaaatgcatatctgcaacaactgcgcaaatggcaatgctgatttcttctcttgctct |
281 |
Q |
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| T |
2689597 |
ttgtattcctgcaactgaaaaatgcatatctgcaacaactgcgcaaatggcaatgctgatttcttcccttgctct |
2689671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 50756547 - 50756436
Alignment:
| Q |
1 |
gagcttctgggtcagggttaacaggaatccagagaccatgttgaagagaaatttgaagaccagaaacgtcattagatctaagaatggtcaagatctgagg |
100 |
Q |
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| T |
50756547 |
gagcttctgggtcagggttaacaggaatccagagaccatgttgaagagaaatttgaagaccagaaacgtcattagatctaagaatggtcaagatctgagg |
50756448 |
T |
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| Q |
101 |
gtcagaatgctc |
112 |
Q |
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| T |
50756447 |
gtcagaatgctc |
50756436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 4320332 - 4320417
Alignment:
| Q |
1 |
gagcttctgggtcagggttaacaggaatccagagaccatgttgaagagaaatttgaagaccagaaacgtcattagatctaagaatg |
86 |
Q |
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| T |
4320332 |
gagcttctgggtcagggttaacaggaatccagagaccatgttgaagagaaatttgaagaccagaaacgtcattagatctaagaatg |
4320417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 12610391 - 12610465
Alignment:
| Q |
35 |
accatgttgaagagaaatttgaagaccagaaacgtcattagatctaagaatggtcaagatctgagggtcagaatg |
109 |
Q |
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| T |
12610391 |
accatgttgaagtgaaatttggagaccagcaacatcgttggatctaaggatagtaagaatctgagggtcagaatg |
12610465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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