View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_1D_low_24 (Length: 284)
Name: NF5039_1D_low_24
Description: NF5039_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_1D_low_24 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 3 - 284
Target Start/End: Complemental strand, 6655196 - 6654915
Alignment:
| Q |
3 |
tgactgtgtgactgttcggttggataatggatcatctgccattacgacagtagcctatgtacatttcctttcggaaggagttggtgaccgtatcagtttt |
102 |
Q |
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| T |
6655196 |
tgactgtgtgactgttcagttggataatggatcatctaccattacgacagtagcctatgtacatttcctttcggaaggagttggtgaccgtatcagtttt |
6655097 |
T |
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| Q |
103 |
aaagacttgacatttcctcactactccacaagtcctgcttttcataatggattattttattttcttatcttaacagggaagttagcagttataaatccaa |
202 |
Q |
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| T |
6655096 |
aaagacttgacatttcctcactactccacaagtcctgcttttcataatggattattttattttcttatcttaacagggaagttagcagttataaatccaa |
6654997 |
T |
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| Q |
203 |
ctagaggagaaataagttggaaagtacttgaggaacctcaagctccatgtagcagctgcttcaacaactttctagttgaatg |
284 |
Q |
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| T |
6654996 |
ctagaggagaaataagttggaaagtacttgaggaacctcaagctccatgtagcagctgcttcaacaactttctagttgaatg |
6654915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 129 - 232
Target Start/End: Complemental strand, 6663197 - 6663094
Alignment:
| Q |
129 |
cacaagtcctgcttttcataatggattattttattttcttatcttaacagggaagttagcagttataaatccaactagaggagaaataagttggaaagta |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||| |||||| ||||||||||||||| | |
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| T |
6663197 |
cacaagtcctgcttttcataatggattattttattttcttactgtaactggaaagttagcagttataaatccaacaagaggaaaaataagttggaaagaa |
6663098 |
T |
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| Q |
229 |
cttg |
232 |
Q |
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|||| |
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| T |
6663097 |
cttg |
6663094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 216 - 284
Target Start/End: Original strand, 6682351 - 6682419
Alignment:
| Q |
216 |
aagttggaaagtacttgaggaacctcaagctccatgtagcagctgcttcaacaactttctagttgaatg |
284 |
Q |
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| T |
6682351 |
aagttggaaggaacttgaggagcctcaagctccatgcaacaagtacttcaacaactttctagttgaatg |
6682419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 163
Target Start/End: Original strand, 6682294 - 6682328
Alignment:
| Q |
129 |
cacaagtcctgcttttcataatggattattttatt |
163 |
Q |
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| T |
6682294 |
cacaagtcctgtttttcataatggattattttatt |
6682328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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