View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_1D_low_26 (Length: 274)
Name: NF5039_1D_low_26
Description: NF5039_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_1D_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 6682166 - 6682424
Alignment:
| Q |
1 |
ttggcatgtcacattccccaacctcttctgaatttatagctgttgagttggatagggaagtaaaa-tttcatgggtcattcaatgctgcaaatatctttt |
99 |
Q |
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| T |
6682166 |
ttggcatgtcacattccccaacctcttctgaatttatagccgttgagttggatagggaagtaaaaatttcatgggtcattcaatgctgcaaatgtctttt |
6682265 |
T |
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| Q |
100 |
atgatagtaggaaatttcctgtctacaacacaagtcctgtttttcataatggattattttattgtctcagcatatgaggaagaagaagttggaaggaact |
199 |
Q |
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| T |
6682266 |
atgatagtaggaaatttcctgtctacaacacaagtcctgtttttcataatggattattttattgtctcagcataagaggaagaagaagttggaaggaact |
6682365 |
T |
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| Q |
200 |
tgaggagcctcaagctccatgcaacaagtacttcaacaactttctagttgaatgtgatg |
258 |
Q |
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| T |
6682366 |
tgaggagcctcaagctccatgcaacaagtacttcaacaactttctagttgaatgtgatg |
6682424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 81 - 166
Target Start/End: Original strand, 6654053 - 6654138
Alignment:
| Q |
81 |
aatgctgcaaatatcttttatgatagtaggaaatttcctgtctacaacacaagtcctgtttttcataatggattattttattgtct |
166 |
Q |
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| T |
6654053 |
aatggtgcaaaaatcttgtatgattgtagggaatttcctgtctacaacataagtactgtttttcataatggattattttattgtct |
6654138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 81 - 172
Target Start/End: Complemental strand, 13245749 - 13245658
Alignment:
| Q |
81 |
aatgctgcaaatatcttttatgatagtaggaaatttcctgtctacaacacaagtcctgtttttcataatggattattttattgtctcagcat |
172 |
Q |
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| T |
13245749 |
aatggtgcaattatcttgtatgattgcagggaatttcctacctacaacataagtcctatttatcataatggattattttattgtcttagcat |
13245658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 185 - 258
Target Start/End: Complemental strand, 6654983 - 6654910
Alignment:
| Q |
185 |
aagttggaaggaacttgaggagcctcaagctccatgcaacaagtacttcaacaactttctagttgaatgtgatg |
258 |
Q |
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| T |
6654983 |
aagttggaaagtacttgaggaacctcaagctccatgtagcagctgcttcaacaactttctagttgaatgtgatg |
6654910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 258
Target Start/End: Complemental strand, 13245601 - 13245542
Alignment:
| Q |
199 |
ttgaggagcctcaagctccatgcaacaagtacttcaacaactttctagttgaatgtgatg |
258 |
Q |
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|||||| |||||||||||||| ||||||| |||||||||| |||||| |||||||||||| |
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| T |
13245601 |
ttgaggggcctcaagctccatacaacaagcacttcaacaattttctacttgaatgtgatg |
13245542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 162
Target Start/End: Complemental strand, 6663213 - 6663163
Alignment:
| Q |
112 |
aatttcctgtctacaacacaagtcctgtttttcataatggattattttatt |
162 |
Q |
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||||| || |||||||||||||||||| ||||||||||||||||||||||| |
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| T |
6663213 |
aattttctctctacaacacaagtcctgcttttcataatggattattttatt |
6663163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 6654196 - 6654236
Alignment:
| Q |
211 |
aagctccatgcaacaagtacttcaacaactttctagttgaa |
251 |
Q |
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| T |
6654196 |
aagctccatacaacaagtacttctacaactttctagttgaa |
6654236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 162
Target Start/End: Complemental strand, 6655070 - 6655036
Alignment:
| Q |
128 |
cacaagtcctgtttttcataatggattattttatt |
162 |
Q |
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||||||||||| ||||||||||||||||||||||| |
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| T |
6655070 |
cacaagtcctgcttttcataatggattattttatt |
6655036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 6653949 - 6653981
Alignment:
| Q |
1 |
ttggcatgtcacattccccaacctcttctgaat |
33 |
Q |
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| T |
6653949 |
ttggcatctcacattccccaacctcttctgaat |
6653981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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