View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_1D_low_27 (Length: 274)
Name: NF5039_1D_low_27
Description: NF5039_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_1D_low_27 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 3 - 274
Target Start/End: Original strand, 46466789 - 46467060
Alignment:
| Q |
3 |
cactgacagcagaaggaacagctacaagggggttggtaaagtgcttctgagcaagcaagaatccaagtgcagagctctgcaaacaaaacaaaaaatgtca |
102 |
Q |
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| T |
46466789 |
cactgacagcagaaggaacagctacaagggggttggtaaagtgcttctgagcaagcaagaatccaagtgcagagctctgcaaacaaaacaaaaaatgtca |
46466888 |
T |
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| Q |
103 |
gattaaacaatcaagcctaaagcacttacaattaatatgaactgagcattatttgattgtataaacgtgtatatattactgttgctgatcaccccttccc |
202 |
Q |
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| T |
46466889 |
gattaaacaatcaagcctaaagcacttacaattaatatgaactgagcattatttgattgtataaacgtgtatatattactgttgctgatcaccccttccc |
46466988 |
T |
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| Q |
203 |
cagaaatttagttcaatgtcatcttaaattattaatctattgatctggaaatcagctgtatacatgctttga |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46466989 |
cagaaatttagttcaatgtcatcttaaattattaatctattgatctggaaatcagctgtatacatgctttga |
46467060 |
T |
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