View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_1D_low_31 (Length: 267)
Name: NF5039_1D_low_31
Description: NF5039_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_1D_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 33 - 252
Target Start/End: Complemental strand, 3282323 - 3282104
Alignment:
| Q |
33 |
ttttggcatcatgagagtgctacatggaaacctaagaaaaattccatgtccatctagtattaagtattgaatccctatgagattttgaaatgaatctggc |
132 |
Q |
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| T |
3282323 |
ttttggcatcatgagagtgctacatggaaacctaagaaaaattccatgtccatctagtattaagtattgaatcccaatgagattttgaaatgaatctggc |
3282224 |
T |
|
| Q |
133 |
aattcatctatggaagtttcttccaaatcaattcctactatgttttccatctttactaatatttctggaaatttcttaagcctataacaatatgaaagtt |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3282223 |
aattcatctatggaagtttcttccaaatcaattcctactatgttttccatctttactaatatttctggaaatttcttaagcctataacaatatgaaagtt |
3282124 |
T |
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| Q |
233 |
caagtagttcaagagatgtc |
252 |
Q |
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|||||||||||||||||||| |
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| T |
3282123 |
caagtagttcaagagatgtc |
3282104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 28 - 248
Target Start/End: Original strand, 28096001 - 28096221
Alignment:
| Q |
28 |
gacatttttggcatcatgagagtgctacatggaaacctaagaaaaattccatgtccatctagtattaagtattgaatccctatgagattttgaaatgaat |
127 |
Q |
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|||| ||||||||||| |||| |||||| ||| ||||||||||| |||| | |||||||| | ||| | | ||| ||| |||||||||||||||||| |
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| T |
28096001 |
gacaattttggcatcacgagaatgctacttggtaacctaagaaacattctaaatccatctaagagtaaatttcgaagcccgctgagattttgaaatgaat |
28096100 |
T |
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| Q |
128 |
ctggcaattcatctatggaagtttcttccaaatcaattcctactatgttttccatctttactaatatttctggaaatttcttaagcctataacaatatga |
227 |
Q |
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| T |
28096101 |
taggcaattcttttatggatgtctctttcaaaaaaatgctttctaggttttccatctttcctaatatttctggaaagttcctaagcctataacaatatga |
28096200 |
T |
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| Q |
228 |
aagttcaagtagttcaagaga |
248 |
Q |
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||| ||||||||| ||||| |
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| T |
28096201 |
cagtctaagtagttccagaga |
28096221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 74 - 231
Target Start/End: Original strand, 26341059 - 26341216
Alignment:
| Q |
74 |
ttccatgtccatctagtattaagtattgaatccctatgagattttgaaatgaatctggcaattcatctatggaagtttcttccaaatcaattcctactat |
173 |
Q |
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|||||||||| ||||||| ||| || |||| || ||||||||||||| ||||| |||||||| || ||||||||||| ||| ||| | | | || |
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| T |
26341059 |
ttccatgtccttctagtagtaaataatgaagtccagtgagattttgaaacgaatcaggcaattcttcaatggaagtttcacttaaagaaatgcttccaat |
26341158 |
T |
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| Q |
174 |
gttttccatctttactaatatttctggaaatttcttaagcctataacaatatgaaagt |
231 |
Q |
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| T |
26341159 |
gttttccatctttcctaatatttctggaaagttcttaagactataacaaaatgaaagt |
26341216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 29828460 - 29828408
Alignment:
| Q |
178 |
tccatctttactaatatttctggaaatttcttaagcctataacaatatgaaag |
230 |
Q |
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||||||||| ||||||||||||||||| ||| ||| |||| |||||||||||| |
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| T |
29828460 |
tccatctttcctaatatttctggaaatctctcaagactattacaatatgaaag |
29828408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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