View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5039_1D_low_39 (Length: 236)

Name: NF5039_1D_low_39
Description: NF5039_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5039_1D_low_39
NF5039_1D_low_39
[»] chr3 (1 HSPs)
chr3 (11-183)||(51056296-51056468)
[»] chr2 (1 HSPs)
chr2 (16-95)||(5051823-5051902)
[»] chr7 (3 HSPs)
chr7 (17-95)||(15118397-15118475)
chr7 (99-131)||(5888404-5888436)
chr7 (99-131)||(36935104-36935136)
[»] chr5 (1 HSPs)
chr5 (3-95)||(9436850-9436942)
[»] chr8 (1 HSPs)
chr8 (87-131)||(38148701-38148745)
[»] chr1 (1 HSPs)
chr1 (79-131)||(48799744-48799796)


Alignment Details
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 11 - 183
Target Start/End: Original strand, 51056296 - 51056468
Alignment:
Q  11 cgaggttgtgttgtggtcattccgtcgttgttgttctcgccggtggttttattcctcttctgcatgatccatattacggtggtgtgatgaggcgcggcct 110  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  51056296 cgaggttgtgttgtggtcattctgtcgtagttgttctcgccggtggttttattcctcttctgcgtgatccatattacggtggtgtgatgaggcgcggcct 51056395  T
Q  111 ctgcatcacctcacctccggctatatggcgacctttgggtgggtggctttaagagttggtagtagtagcccgc 183  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  51056396 atgcatcacctcacctccggctatatggcgacctttgggtgggtggctttaggagttggtagtagtagcccgc 51056468  T

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Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 5051902 - 5051823
Alignment:
Q  16 ttgtgttgtggtcattccgtcgttgttgttctcgccggtggttttattcctcttctgcatgatccatattacggtggtgt 95  Q
    ||||||||| ||||||||||||| |  ||||||| ||||||||||||||||||||||| |||||||||| | ||||||||    
T  5051902 ttgtgttgtagtcattccgtcgtagcggttctcgtcggtggttttattcctcttctgcgtgatccatatgatggtggtgt 5051823  T

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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 15118397 - 15118475
Alignment:
Q  17 tgtgttgtggtcattccgtcgttgttgttctcgccggtggttttattcctcttctgcatgatccatattacggtggtgt 95  Q
    ||||||||||||||| |||||  || |||||||||| ||||||||||| |||||||| |||||||||| ||||||||||    
T  15118397 tgtgttgtggtcatttcgtcgcagtggttctcgccgatggttttattcttcttctgcgtgatccatatgacggtggtgt 15118475  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 131
Target Start/End: Original strand, 5888404 - 5888436
Alignment:
Q  99 gaggcgcggcctctgcatcacctcacctccggc 131  Q
    ||||||||||||| |||||||||||||||||||    
T  5888404 gaggcgcggcctccgcatcacctcacctccggc 5888436  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 36935136 - 36935104
Alignment:
Q  99 gaggcgcggcctctgcatcacctcacctccggc 131  Q
    ||||||||||||| |||||||||||||||||||    
T  36935136 gaggcgcggcctccgcatcacctcacctccggc 36935104  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 95
Target Start/End: Complemental strand, 9436942 - 9436850
Alignment:
Q  3 ttggagttcgaggttgtgttgtggtcattccgtcgttgttgttctcgccggtggttttattcctcttctgcatgatccatattacggtggtgt 95  Q
    |||| ||||| ||||||||| |||||||| |||||  |  ||||||||| ||||||||||||||||| ||| || ||||||| | ||||||||    
T  9436942 ttggtgttcggggttgtgttctggtcattacgtcgcagcggttctcgccagtggttttattcctcttatgcgtggtccatatgatggtggtgt 9436850  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 131
Target Start/End: Original strand, 38148701 - 38148745
Alignment:
Q  87 cggtggtgtgatgaggcgcggcctctgcatcacctcacctccggc 131  Q
    |||||||| ||||||| |||||||| |||||||||||||||||||    
T  38148701 cggtggtgcgatgaggtgcggcctccgcatcacctcacctccggc 38148745  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 48799744 - 48799796
Alignment:
Q  79 ccatattacggtggtgtgatgaggcgcggcctctgcatcacctcacctccggc 131  Q
    |||||| ||||||||| ||||||||||||||||  || ||||||| |||||||    
T  48799744 ccatatgacggtggtgcgatgaggcgcggcctccacaccacctcagctccggc 48799796  T

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