View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_1D_low_45 (Length: 223)
Name: NF5039_1D_low_45
Description: NF5039_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_1D_low_45 |
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Alignment Details
Target: chr3 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 76 - 203
Target Start/End: Original strand, 54546277 - 54546404
Alignment:
| Q |
76 |
ccaaactcgttgatcaactttcttattccaaaccatgttgttgtattgctttgaaatactccatatcatcaccaaacaaacaacaaaaaggttgtcttca |
175 |
Q |
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| T |
54546277 |
ccaaactcattgatctactttcttattccaaaccatgttgttgcgttgctttgaaatactctatatcatcaccaaacaaacaacaaaaaggttgtcttca |
54546376 |
T |
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| Q |
176 |
cgatgcgccgtagaatttcaagaaatac |
203 |
Q |
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| T |
54546377 |
cgatgcgccatagaatttcaagaaatac |
54546404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 37902543 - 37902608
Alignment:
| Q |
16 |
gacatcagaaagtttaggattgtttacatattgctcacccaagtaaacctgcatacaacaccaaac |
81 |
Q |
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| T |
37902543 |
gacatcagaaagtttaggattgtttacgtattgctcacccaagtaaacctgcatacaacacaaaac |
37902608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 37909054 - 37909119
Alignment:
| Q |
16 |
gacatcagaaagtttaggattgtttacatattgctcacccaagtaaacctgcatacaacaccaaac |
81 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
37909054 |
gacatcagaaagtttaggattgtttacgtattgctcacccaagtaaacctgcatacaacacaaaac |
37909119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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