View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5039_1D_low_46 (Length: 222)

Name: NF5039_1D_low_46
Description: NF5039_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5039_1D_low_46
NF5039_1D_low_46
[»] scaffold1312 (1 HSPs)
scaffold1312 (7-203)||(1350-1546)
[»] chr7 (2 HSPs)
chr7 (7-119)||(26374562-26374674)
chr7 (54-91)||(6198479-6198516)
[»] chr8 (3 HSPs)
chr8 (59-128)||(21586497-21586566)
chr8 (59-149)||(760091-760181)
chr8 (7-123)||(43215796-43215911)
[»] chr5 (1 HSPs)
chr5 (59-128)||(33011547-33011616)
[»] chr3 (2 HSPs)
chr3 (59-128)||(12744020-12744089)
chr3 (40-117)||(10974187-10974264)
[»] scaffold0211 (1 HSPs)
scaffold0211 (54-193)||(18451-18590)
[»] chr4 (6 HSPs)
chr4 (54-193)||(6554490-6554629)
chr4 (59-126)||(39977214-39977281)
chr4 (32-137)||(42727146-42727251)
chr4 (59-128)||(284293-284362)
chr4 (70-200)||(13233018-13233145)
chr4 (54-123)||(24180971-24181040)
[»] scaffold0021 (1 HSPs)
scaffold0021 (40-117)||(126828-126905)
[»] chr1 (2 HSPs)
chr1 (54-199)||(43385112-43385257)
chr1 (65-115)||(7844621-7844671)
[»] scaffold0114 (1 HSPs)
scaffold0114 (54-193)||(36989-37128)
[»] chr2 (3 HSPs)
chr2 (59-193)||(31965844-31965978)
chr2 (70-201)||(5787220-5787351)
chr2 (54-115)||(34425583-34425644)
[»] scaffold0159 (1 HSPs)
scaffold0159 (70-201)||(31593-31724)
[»] chr6 (1 HSPs)
chr6 (39-115)||(26594995-26595071)
[»] scaffold0380 (1 HSPs)
scaffold0380 (33-128)||(16816-16911)


Alignment Details
Target: scaffold1312 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: scaffold1312
Description:

Target: scaffold1312; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 7 - 203
Target Start/End: Complemental strand, 1546 - 1350
Alignment:
7 aatgagatggacatcacaatttctcccaaaaaatttaggcacacgtttatgagtcatttcacttatatcttattcaacatctattattcaatccattgta 106  Q
    ||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
1546 aatgacattgacatcacaatttctcccaaaaaatttaggcgcacgtttatgagtcatttcacttatatcttattcaacatctattattcaatacattgta 1447  T
107 gaactttaactcttatttgacaaaataacatatcttcctcaagtataagattctctgtttccgtaattacgtgacatagtcaaataaagtcaaactg 203  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
1446 gaactttaactcttatttgacacaataacatctcttcctcaagtataagattcttcgtttccgtaattacgtgacatagtcaaataaagtcaaactg 1350  T

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Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 7 - 119
Target Start/End: Original strand, 26374562 - 26374674
Alignment:
7 aatgagatggacatcacaatttctcccaaaaaatttaggcacacgtttatgagtcatttcacttatatcttattcaacatctattattcaatccattgta 106  Q
    ||||| || |||| ||||||||||||||||   |||||||||| |||| |||||||| ||||||||||||||||||||||||| |||||  | ||| |||    
26374562 aatgatattgacaccacaatttctcccaaattctttaggcacatgtttgtgagtcatctcacttatatcttattcaacatctactattcctttcatggta 26374661  T
107 gaactttaactct 119  Q
    |||||||| ||||    
26374662 gaactttatctct 26374674  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 91
Target Start/End: Complemental strand, 6198516 - 6198479
Alignment:
54 tatgagtcatttcacttatatcttattcaacatctatt 91  Q
    ||||||||||||||||||||| ||||||| ||||||||    
6198516 tatgagtcatttcacttatatgttattcatcatctatt 6198479  T

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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 59 - 128
Target Start/End: Original strand, 21586497 - 21586566
Alignment:
59 gtcatttcacttatatcttattcaacatctattattcaatccattgtagaactttaactcttatttgaca 128  Q
    ||||| |||||||||| |||||||||||||| ||||| ||| |||||||||||||||||| |||||||||    
21586497 gtcatctcacttatatgttattcaacatctactattccatcaattgtagaactttaactcatatttgaca 21586566  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 149
Target Start/End: Complemental strand, 760181 - 760091
Alignment:
59 gtcatttcacttatatcttattcaacatctattattcaatccattgtagaactttaactcttatttgacaaaataacatatcttcctcaag 149  Q
    |||||||||||||||| |||||| ||||||| | ||   || |||||||||||| || || ||||||||| | |||||| ||| |||||||    
760181 gtcatttcacttatatgttattccacatctactctttcttctattgtagaacttaaaatcatatttgacacattaacatctctccctcaag 760091  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 123
Target Start/End: Original strand, 43215796 - 43215911
Alignment:
7 aatgagatggacatcacaatttctcccaaaaaatttaggcacacgtttatgagtcatttcacttatatcttattcaacatctattattcaatccattgta 106  Q
    |||||||| |||| |||| |||   |||||| |||||| |||| || |||||||||||| |||||||| ||||||| |||||| | ||  ||| ||||||    
43215796 aatgagattgacaccacatttttatccaaaatatttagacacatgtatatgagtcattt-acttatatgttattcatcatctactctttcatctattgta 43215894  T
107 gaactttaactcttatt 123  Q
     || |||||||| ||||    
43215895 aaattttaactcatatt 43215911  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 59 - 128
Target Start/End: Original strand, 33011547 - 33011616
Alignment:
59 gtcatttcacttatatcttattcaacatctattattcaatccattgtagaactttaactcttatttgaca 128  Q
    ||||| |||| ||||| |||||||||||||| ||||| ||| ||||||||||||||||||||||||||||    
33011547 gtcatctcacatatatgttattcaacatctactattccatcaattgtagaactttaactcttatttgaca 33011616  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 59 - 128
Target Start/End: Original strand, 12744020 - 12744089
Alignment:
59 gtcatttcacttatatcttattcaacatctattattcaatccattgtagaactttaactcttatttgaca 128  Q
    ||||| |||||||||| |||||||||||||| ||||| ||| |||||||||||||||||| |||||||||    
12744020 gtcatctcacttatatgttattcaacatctactattccatcaattgtagaactttaactcatatttgaca 12744089  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 40 - 117
Target Start/End: Original strand, 10974187 - 10974264
Alignment:
40 tttaggcacacgtttatgagtcatttcacttatatcttattcaacatctattattcaatccattgtagaactttaact 117  Q
    |||||||||| || ||||| |||| ||||||||| ||||||||||||||| | | | |||||||||||||||||||||    
10974187 tttaggcacatgtatatgactcatctcacttataacttattcaacatctactttaccatccattgtagaactttaact 10974264  T

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Target: scaffold0211 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 54 - 193
Target Start/End: Original strand, 18451 - 18590
Alignment:
54 tatgagtcatttcacttatatcttattcaacatctattattcaatccattgtagaactttaactcttatttgacaaaataacatatcttcctcaagtata 153  Q
    |||||||||| |||||||||| |||||||| ||||| | ||| ||||| | ||||| ||||||||  | ||||| || |||||| ||||  |||||| |     
18451 tatgagtcatctcacttatatgttattcaaaatctactcttctatccactatagaattttaactcacacttgactaattaacatctcttattcaagtttg 18550  T
154 agattctctgtttccgtaattacgtgacatagtcaaataa 193  Q
      | ||||||| ||| ||||||||||||||||||||||||    
18551 caactctctgtgtccataattacgtgacatagtcaaataa 18590  T

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Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 54 - 193
Target Start/End: Complemental strand, 6554629 - 6554490
Alignment:
54 tatgagtcatttcacttatatcttattcaacatctattattcaatccattgtagaactttaactcttatttgacaaaataacatatcttcctcaagtata 153  Q
    |||||||||| |||||||||| |||||||| ||||| | ||| ||||| | ||||| ||||||||  | |||||| | |||||| ||||  |||||| |     
6554629 tatgagtcatctcacttatatgttattcaaaatctactcttccatccactatagaattttaactcacacttgacacattaacatctcttattcaagtttg 6554530  T
154 agattctctgtttccgtaattacgtgacatagtcaaataa 193  Q
      | ||||||| ||| ||||||||||||||||||||||||    
6554529 caactctctgtgtccataattacgtgacatagtcaaataa 6554490  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 39977281 - 39977214
Alignment:
59 gtcatttcacttatatcttattcaacatctattattcaatccattgtagaactttaactcttatttga 126  Q
    ||||| |||||||||| |||||||||||||| ||||| ||| |||||||||||||||||| |||||||    
39977281 gtcatctcacttatatgttattcaacatctactattccatcaattgtagaactttaactcatatttga 39977214  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 32 - 137
Target Start/End: Original strand, 42727146 - 42727251
Alignment:
32 ccaaaaaatttaggcacacgtttatgagtcatttcacttatatcttattcaacatcta-ttattcaatccattgtagaactttaactcttatttgacaaa 130  Q
    |||||||||||||||||| | ||| | ||||| |||| ||||| |||||||| ||||| | |||| ||| |||||||||||||||||| ||||||||| |    
42727146 ccaaaaaatttaggcacatgcttacgggtcatctcacatatatgttattcaatatctactcattc-atctattgtagaactttaactcatatttgacaca 42727244  T
131 ataacat 137  Q
     ||||||    
42727245 ttaacat 42727251  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 128
Target Start/End: Complemental strand, 284362 - 284293
Alignment:
59 gtcatttcacttatatcttattcaacatctattattcaatccattgtagaactttaactcttatttgaca 128  Q
    ||||| |||| ||||| ||| |||||||||| ||||| ||| |||||||||||||||||| |||||||||    
284362 gtcatctcacatatatgttactcaacatctactattccatcaattgtagaactttaactcatatttgaca 284293  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 200
Target Start/End: Complemental strand, 13233145 - 13233018
Alignment:
70 tatatcttattcaacatctattattcaatccattgtagaactttaactcttatttgacaaaataacatatcttcctcaagtataagattctctgtttccg 169  Q
    ||||| ||||||||||| || ||||| ||| |||||||||||||||||| || |||||| |  ||||| |  ||| ||||| |  || ||||||| ||||    
13233145 tatatgttattcaacatatactattccatcaattgtagaactttaactcatacttgacata--aacatct-atccccaagtgtgcgactctctgtgtccg 13233049  T
170 taattacgtgacatagtcaaataaagtcaaa 200  Q
    ||||||  | |||||||||||||| ||||||    
13233048 taattatatcacatagtcaaataaggtcaaa 13233018  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 24180971 - 24181040
Alignment:
54 tatgagtcatttcacttatatcttattcaacatctattattcaatccattgtagaactttaactcttatt 123  Q
    ||||||| ||||||||||||| ||||||| |||||| | ||| ||| |||||| || |||||||| ||||    
24180971 tatgagttatttcacttatatgttattcatcatctactcttccatctattgtaaaattttaactcatatt 24181040  T

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Target: scaffold0021 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 40 - 117
Target Start/End: Original strand, 126828 - 126905
Alignment:
40 tttaggcacacgtttatgagtcatttcacttatatcttattcaacatctattattcaatccattgtagaactttaact 117  Q
    |||||||||| || ||||| |||| ||||||||| ||||||||||||||| | | | |||||||||||||||||||||    
126828 tttaggcacatgtatatgactcatctcacttataacttattcaacatctactttaccatccattgtagaactttaact 126905  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 54 - 199
Target Start/End: Original strand, 43385112 - 43385257
Alignment:
54 tatgagtcatttcacttatatcttattcaacatctattattcaatccattgtagaactttaactcttatttgacaaaataacatatcttcctcaagtata 153  Q
    |||||||||| |||| ||||| |||||||||||||| ||||| ||| ||| |||||||||||||| || |||||| | |||||| | | || | ||| |     
43385112 tatgagtcatctcacatatatgttattcaacatctactattccatcaattctagaactttaactcatacttgacatattaacatctatcccccgagtgtg 43385211  T
154 agattctctgtttccgtaattacgtgacatagtcaaataaagtcaa 199  Q
     |  ||||| | ||||||||||  |||||||||||||||| |||||    
43385212 cggctctctatgtccgtaattatatgacatagtcaaataaggtcaa 43385257  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 115
Target Start/End: Original strand, 7844621 - 7844671
Alignment:
65 tcacttatatcttattcaacatctattattcaatccattgtagaactttaa 115  Q
    |||||||||| || ||||||||||||||||  ||||| |||||||||||||    
7844621 tcacttatatgttgttcaacatctattattgcatccaatgtagaactttaa 7844671  T

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Target: scaffold0114 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 193
Target Start/End: Complemental strand, 37128 - 36989
Alignment:
54 tatgagtcatttcacttatatcttattcaacatctattattcaatccattgtagaactttaactcttatttgacaaaataacatatcttcctcaagtata 153  Q
    ||||| |||| |||||||||| |||||||| ||||| | ||| ||||| | ||||| ||||||||  | |||||| | |||||| ||||  |||||| |     
37128 tatgaatcatctcacttatatgttattcaaaatctactcttctatccactatagaattttaactcacacttgacacattaacatctcttattcaagtttg 37029  T
154 agattctctgtttccgtaattacgtgacatagtcaaataa 193  Q
      | ||||||| ||| |||||||||||| |||||||||||    
37028 caactctctgtgtccataattacgtgacgtagtcaaataa 36989  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 193
Target Start/End: Original strand, 31965844 - 31965978
Alignment:
59 gtcatttcacttatatcttattcaacatctattattcaatccattgtagaactttaactcttatttgacaaaataacatatcttcctcaagtataagatt 158  Q
    ||||| |||||||||| |||||||| ||||| | ||| ||| | | ||||| |||||||| || |||||| | |||| | ||||  |||||| |   | |    
31965844 gtcatctcacttatatgttattcaaaatctactcttctatctactatagaattttaactcatacttgacacattaacttctcttattcaagtttgcaact 31965943  T
159 ctctgtttccgtaattacgtgacatagtcaaataa 193  Q
    |||||| ||| ||||||||||||||||||||||||    
31965944 ctctgtgtccataattacgtgacatagtcaaataa 31965978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 201
Target Start/End: Original strand, 5787220 - 5787351
Alignment:
70 tatatcttattcaacatctattattcaatccattgtagaactttaactcttatttgacaaaataacatatcttcctc-aagtataagattctctgtttcc 168  Q
    ||||| |||||||||||||| ||||| ||| ||||||| |||||||||| ||  ||||| | ||||||||  ||||| |||| |  || | | ||| |||    
5787220 tatatgttattcaacatctactattccatcaattgtagtactttaactcatacatgacatattaacatat-atcctcaaagtgtgtgactttatgtgtcc 5787318  T
169 gtaattacgtgacatagtcaaataaagtcaaac 201  Q
    |||||||  |||||||||||||||| |||||||    
5787319 gtaattatatgacatagtcaaataaggtcaaac 5787351  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 34425583 - 34425644
Alignment:
54 tatgagtcatttcacttatatcttattcaacatctattattcaatccattgtagaactttaa 115  Q
    ||||||| || |||||||||| || ||||||||||||||||  ||||| ||| |||||||||    
34425583 tatgagttatatcacttatatgttgttcaacatctattattgcatccaatgtggaactttaa 34425644  T

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Target: scaffold0159 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 201
Target Start/End: Original strand, 31593 - 31724
Alignment:
70 tatatcttattcaacatctattattcaatccattgtagaactttaactcttatttgacaaaataacatatcttcctc-aagtataagattctctgtttcc 168  Q
    ||||| |||||||||||||| ||||| ||| ||||||| |||||||||| ||  ||||| | ||||||||  ||||| |||| |  || | | ||| |||    
31593 tatatgttattcaacatctactattccatcaattgtagtactttaactcatacatgacatattaacatat-atcctcaaagtgtgtgactttatgtgtcc 31691  T
169 gtaattacgtgacatagtcaaataaagtcaaac 201  Q
    |||||||  |||||||||||||||| |||||||    
31692 gtaattatatgacatagtcaaataaggtcaaac 31724  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 115
Target Start/End: Original strand, 26594995 - 26595071
Alignment:
39 atttaggcacacgtttatgagtcatttcacttatatcttattcaacatctattattcaatccattgtagaactttaa 115  Q
    ||||||||| | || ||||| |||| ||| ||||||||||||||||||||| ||    |||||||||||||||||||    
26594995 atttaggcatatgtatatgactcatctcagttatatcttattcaacatctactacaatatccattgtagaactttaa 26595071  T

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Target: scaffold0380 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 128
Target Start/End: Complemental strand, 16911 - 16816
Alignment:
33 caaaaaatttaggcacacgtttatgagtcatttcacttatatcttattcaacatctattattcaatccattgtagaactttaactcttatttgaca 128  Q
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16911 caaaatatttaggcacatatatatgggtcatctcacatatatgttattaaacatatatcattctatcaattgtagaactttaaatcatatctgaca 16816  T

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