View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_1D_low_48 (Length: 221)
Name: NF5039_1D_low_48
Description: NF5039_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_1D_low_48 |
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| [»] chr1 (4 HSPs) |
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| [»] scaffold0432 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 13 - 221
Target Start/End: Complemental strand, 9805341 - 9805133
Alignment:
| Q |
13 |
gacatcattgaacaggataagatggaaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgatttttgttttattcggttattaaaata |
112 |
Q |
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| T |
9805341 |
gacatcattgaacaggacaagatggaaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgattttttttttattcggttattaaaata |
9805242 |
T |
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| Q |
113 |
tgtacttgtatttgttatttgctatttacttctagtacacattttatcttaaatttttgtacacataaatgcatcaaagggaaaaggaattcttgttgaa |
212 |
Q |
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| T |
9805241 |
tgtacttgtatttgttattttctatttacttctagtacacattttatattaaatttttgtacataggaatgcatcaaagggaaaaggaattcttgttgaa |
9805142 |
T |
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| Q |
213 |
caaaatgaa |
221 |
Q |
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| T |
9805141 |
caaaatgaa |
9805133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 72 - 221
Target Start/End: Complemental strand, 9818211 - 9818060
Alignment:
| Q |
72 |
aaggtatattgtgattt--ttgttttattcggttattaaaatatgtacttgtatttgttatttgctatttacttctagtacacattttatcttaaatttt |
169 |
Q |
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| T |
9818211 |
aaggtatattgtgatttattttttttatacggttattaaattatgtacttgtatttgttattttctatttacttctagtacacaatttatattaaatttt |
9818112 |
T |
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| Q |
170 |
tgtacacataaatgcatcaaagggaaaaggaattcttgttgaacaaaatgaa |
221 |
Q |
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| T |
9818111 |
tgtacacaagaatgcatcaaagggaaaaggaattcttgttgaacaaaatgaa |
9818060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 13 - 177
Target Start/End: Original strand, 9806455 - 9806621
Alignment:
| Q |
13 |
gacatcattgaacaggataagatggaaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgatt--tttgttttattcggttattaaaa |
110 |
Q |
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| T |
9806455 |
gacatcattgaacaagacaagatggaaggtatttcacgtgctcacgaaaagggagaatcaaggtatattgtgatttatttattttagttggttattcaaa |
9806554 |
T |
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| Q |
111 |
tatgtacttgtatttgttatttgctatttacttctagtacacattttatcttaaatttttgtacaca |
177 |
Q |
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| T |
9806555 |
tatgtacttgtgtttgttattttctatttgtttctaatacacattttatatttaatttttgtacaca |
9806621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 221
Target Start/End: Original strand, 9806621 - 9806653
Alignment:
| Q |
189 |
aagggaaaaggaattcttgttgaacaaaatgaa |
221 |
Q |
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| T |
9806621 |
aagggaaaaggaattattgttgaacaaaatgaa |
9806653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 10 - 221
Target Start/End: Complemental strand, 12285 - 12074
Alignment:
| Q |
10 |
atggacatcattgaacaggataagatggaaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgattt-ttgttttattcggttattaa |
108 |
Q |
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| T |
12285 |
atggacatcattgatcatgacaagatggaaggtattccatgtactcatgaaaagggggaatcaacgtattttgtgatttatttttttagttggttattca |
12186 |
T |
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| Q |
109 |
aatatgtacttgtatttgttatttgctatttacttctagtacacattttatcttaaatttttgtacacataaatgcatcaaagggaaaaggaattcttgt |
208 |
Q |
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| T |
12185 |
attatgtacttatgtttgttattttatatttacttctagtac-cattttatattaaattttggtacacgataatgcagcgaagggagaaggaattcttgt |
12087 |
T |
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| Q |
209 |
tgaacaaaatgaa |
221 |
Q |
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| T |
12086 |
tgaacaaaatgaa |
12074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 38 - 129
Target Start/End: Complemental strand, 2371144 - 2371052
Alignment:
| Q |
38 |
aaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgattt-ttgttttattcggttattaaaatatgtacttgtatttgtta |
129 |
Q |
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| T |
2371144 |
aaggtattccatgtactcgtgaaaaaggagaatcaaggtatattgtgatttatttttttagtcgattattcaaatatatacttatgtttgtta |
2371052 |
T |
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