View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_1D_low_53 (Length: 218)
Name: NF5039_1D_low_53
Description: NF5039_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_1D_low_53 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 28130357 - 28130591
Alignment:
| Q |
1 |
tcatacctttcactttctcattaataatgttatcacaaaacaaaactctgtatgattgtaggaatgcttggtctgcttctacacggaattgaactcaacc |
100 |
Q |
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| T |
28130357 |
tcatacctttcactttctcattaataatgttatcacaaaacaaaactctgtatgattgtaggaatgcttggtctgcttctacacggaattgaactcaacc |
28130456 |
T |
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| Q |
101 |
caacgtgactatgctcagaccgctcaagcatgtgggaaag-----------------gtatggccgagcaaaaattgaagctggcaaattagagctggaa |
183 |
Q |
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| T |
28130457 |
caacgtgactatgctcagaccgctcaagcatgtgggaaggctctgattaaacgaagtgcttgaccgagcaaaaattgaagctggcaaattagagctggaa |
28130556 |
T |
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| Q |
184 |
gcggttccatttgaccttcgttccatactcgatga |
218 |
Q |
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| T |
28130557 |
gcggttccatttgaccttcgttccatactcgatga |
28130591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 109; Significance: 5e-55; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 44821258 - 44821119
Alignment:
| Q |
1 |
tcatacctttcactttctcattaataatgttatcacaaaacaaaactctgtatgattgtaggaatgcttggtctgcttcta--cacggaattgaactcaa |
98 |
Q |
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| T |
44821258 |
tcatagctttcacttgctcattaataatgttatcacaaaacaaaactctgtatgattgtaggaatgcttggtctgcttctacgcacggaattgaactcaa |
44821159 |
T |
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| Q |
99 |
cccaacgtgactatgctcagaccgctcaagcatgtgggaa |
138 |
Q |
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| T |
44821158 |
ctcaacgggactatgctcagactgctcaagcatgtgggaa |
44821119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 147 - 218
Target Start/End: Complemental strand, 44821085 - 44821014
Alignment:
| Q |
147 |
ccgagcaaaaattgaagctggcaaattagagctggaagcggttccatttgaccttcgttccatactcgatga |
218 |
Q |
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| T |
44821085 |
ccgagcaaaaattgaagctggcaaattagagctggaagcggttccatttgaccttcgttccatactcgatga |
44821014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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