View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_1D_low_54 (Length: 215)
Name: NF5039_1D_low_54
Description: NF5039_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_1D_low_54 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 8 - 214
Target Start/End: Original strand, 29651918 - 29652124
Alignment:
| Q |
8 |
gagatgaacaagaagatatgacagttacccatgttgtttcgtctggttggacatttccagggctaagcatgtcattgaacaatcttatagtttcttctgg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29651918 |
gagatgaacaagaagatatgacagttacccatgttgtttcgtctggttggacatttccagggctaagcatgtcattgaacaatcttatagtttcttctgg |
29652017 |
T |
|
| Q |
108 |
tgctcccccttgagcataccctgatagcattgcattccaagataccacacttctttctggcattttgtcaaaatacatccttgcagtcttcaaattcccc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29652018 |
tgctcccccttgagcataccctgatagcattgcattccaagataccacacttctttctggcattttgtcaaaatacatccttgcagtcttcaaattcccc |
29652117 |
T |
|
| Q |
208 |
ttctttg |
214 |
Q |
| |
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||||||| |
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| T |
29652118 |
ttctttg |
29652124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 8 - 214
Target Start/End: Original strand, 29633996 - 29634202
Alignment:
| Q |
8 |
gagatgaacaagaagatatgacagttacccatgttgtttcgtctggttggacatttccagggctaagcatgtcattgaacaatcttatagtttcttctgg |
107 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29633996 |
gagatgaacaagaagatatgacagttgcccatgttgtttcgtctggttggacatttccagggctaagcatgtcattgaacaatcttatagtttcttctgg |
29634095 |
T |
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| Q |
108 |
tgctcccccttgagcataccctgatagcattgcattccaagataccacacttctttctggcattttgtcaaaatacatccttgcagtcttcaaattcccc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29634096 |
tgctcccccttgagcataccctgatagcattgcattccaagataccacacttctttctggcattttgtcaaaatacatccttgcagtcttcaaattcccc |
29634195 |
T |
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| Q |
208 |
ttctttg |
214 |
Q |
| |
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||||||| |
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| T |
29634196 |
ttctttg |
29634202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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