View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_1D_low_56 (Length: 213)
Name: NF5039_1D_low_56
Description: NF5039_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_1D_low_56 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-103
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 47304280 - 47304080
Alignment:
| Q |
1 |
gagtctgtattcaacagaaacaactattgaatttgctagtggaacgaagatgttgaagtgttcgtggtgcacgttggagaaagcggattcgaagaagaaa |
100 |
Q |
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| T |
47304280 |
gagtctgtattcaacagaaacaactattgaatttgctagtggaatgaagatgttgaagtgttcgtggtgcactttggagaaagcggactcgaagaagaaa |
47304181 |
T |
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| Q |
101 |
ccaccgccatggaagaagactaagatggggagttttgtggtggggtttttggggaggtagatacgagcggagatattggggttttgagagatgatgatgt |
200 |
Q |
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| T |
47304180 |
ccaccgccatggaagaagactaagatggggagttttgtggtggggtttttggggaggtagatacgagcggagatattggggttttgagagatgatgatgt |
47304081 |
T |
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| Q |
201 |
c |
201 |
Q |
| |
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| |
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| T |
47304080 |
c |
47304080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 2 - 201
Target Start/End: Complemental strand, 47301381 - 47301182
Alignment:
| Q |
2 |
agtctgtattcaacagaaacaactattgaatttgctagtggaacgaagatgttgaagtgttcgtggtgcacgttggagaaagcggattcgaagaagaaac |
101 |
Q |
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| T |
47301381 |
agtctgtattcaacagaaacaactattgaatttgcttgcggaacgaagacgttgaagtgttcgtggtagagtttggagaaagcggattcaaagaagaaac |
47301282 |
T |
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| Q |
102 |
caccgccatggaagaagactaagatggggagttttgtggtggggtttttggggaggtagatacgagcggagatattggggttttgagagatgatgatgtc |
201 |
Q |
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| T |
47301281 |
caccgccatggaagaagaccaagatgggaagttttgtagtggggtttttggggaggtagatacgagcagagatgttggggttttgagagatgatgatgtc |
47301182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 4e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 17841519 - 17841392
Alignment:
| Q |
1 |
gagtctgtattcaacagaaacaactattgaatttgctagtggaacgaagatgttgaagtgttcgtggtgcacgttggagaaagcggattcgaagaagaaa |
100 |
Q |
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|||||||||||||||||||||||| || ||||| |||||||||||||||| ||| ||||||||||||| | ||||||||||||||||| ||||||||| |
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| T |
17841519 |
gagtctgtattcaacagaaacaacaatggaattcgctagtggaacgaagacattgcagtgttcgtggtggattttggagaaagcggattcaaagaagaaa |
17841420 |
T |
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| Q |
101 |
ccaccgccatggaagaagactaagatgg |
128 |
Q |
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| T |
17841419 |
ccaccgccatggaagaagaccaagatgg |
17841392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 198
Target Start/End: Complemental strand, 17841359 - 17841313
Alignment:
| Q |
152 |
gggaggtagatacgagcggagatattggggttttgagagatgatgat |
198 |
Q |
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||||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
17841359 |
gggagatagatacgagcggagatgttggggttttgagagatgatgat |
17841313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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