View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_1D_low_58 (Length: 213)
Name: NF5039_1D_low_58
Description: NF5039_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_1D_low_58 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 33364499 - 33364290
Alignment:
| Q |
1 |
tctttttggcatcacgcacttcaaatggctacttatctcttaaacatcctacccaccaagaaactagctcttcaaacaccaaccacaattccctaccaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33364499 |
tctttttggcatcacgcacttcaaatggctacttatctcttaaacatcctacccaccaagaaactagctcttcaaacaccaaccacaattctctaccaaa |
33364400 |
T |
|
| Q |
101 |
aatctccatcctactctcatcttaaagtctttggttgtctatgttttcccctcatcccttccactacaagaaatagacttaaagcaagatcaacaccatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
33364399 |
aatctccatcctactctcatcttaaagtctttggttgtctatgttttcccctcatcccttccactacaagaaataaacttcaagcaagatcaacaccatg |
33364300 |
T |
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| Q |
201 |
tgtattttta |
210 |
Q |
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|||||||||| |
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| T |
33364299 |
tgtattttta |
33364290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 32309269 - 32309057
Alignment:
| Q |
1 |
tctttttggcatcacgcacttcaaatggctacttatctcttaaacatcctacccaccaagaaactagctcttcaaacaccaaccacaattccctaccaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32309269 |
tctttttggcatcacgcacttcaaatggctacttatctcttaaacatcctacccaccaagaaactagctcttcaaacaccaaccacaattctctaccaaa |
32309170 |
T |
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| Q |
101 |
aatctccatcctactctcatcttaaagtctttggttgtctatgttttcccctcatcccttccactacaagaaatagacttaaagcaagatcaacaccatg |
200 |
Q |
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| T |
32309169 |
aatctccatcctactctcatcttaaagtctttggatgtctatgttttcccctcatcccttccactacaagaaataaacttcaagcaagatcaacaccatg |
32309070 |
T |
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| Q |
201 |
tgtatttttagga |
213 |
Q |
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| T |
32309069 |
tgtatttttagga |
32309057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 30330391 - 30330600
Alignment:
| Q |
1 |
tctttttggcatcacgcacttcaaatggctacttatctcttaaacatcctacccaccaagaaactagctcttcaaacaccaaccacaattccctaccaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30330391 |
tctttttggcatcacgcacttcaaatggctacttatctcttaaacatcctacccaccaagaaactagctcttcaaacaccaaccacaattctctaccaaa |
30330490 |
T |
|
| Q |
101 |
aatctccatcctactctcatcttaaagtctttggttgtctatgttttcccctcatcccttccactacaagaaatagacttaaagcaagatcaacaccatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
30330491 |
aatctccatcctactctcatcttaaagtctttggctgtctatgttttcccctcatcccttccactacaagaaataaacttcaagcaagatcaacaccatg |
30330590 |
T |
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| Q |
201 |
tgtattttta |
210 |
Q |
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|||||||||| |
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| T |
30330591 |
tgtattttta |
30330600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 201
Target Start/End: Complemental strand, 22002222 - 22002086
Alignment:
| Q |
65 |
tagctcttcaaacaccaaccacaattccctaccaaaa-atctccatcctactctcatcttaaagtctttggttgtctatgttttcccctcatcccttcca |
163 |
Q |
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|||||||| |||| ||||| || ||||| || ||||| || ||| ||||| ||||||||||||||| | || ||||| |||||||| | |||||||||| |
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| T |
22002222 |
tagctcttaaaaccccaactacgattccttatcaaaatatttcc-tcctattctcatcttaaagtcatcgggtgtctctgttttccattaatcccttcca |
22002124 |
T |
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| Q |
164 |
ctacaagaaatagacttaaagcaagatcaacaccatgt |
201 |
Q |
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|||| ||||||| ||| || |||| |||||||||||| |
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| T |
22002123 |
ctactagaaataaactgcaaccaaggtcaacaccatgt |
22002086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 212
Target Start/End: Original strand, 18031427 - 18031575
Alignment:
| Q |
65 |
tagctcttcaaacaccaaccacaa-ttccctaccaaaaatctccatcctactctcatcttaaagtctttggttgtctatgttttcccctcatcccttcca |
163 |
Q |
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|||||||||||||||||| |||| || ||||||||| ||| ||||| ||||| ||||||||||| | ||||| |||||||| |||||||||||| |
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| T |
18031427 |
tagctcttcaaacaccaaatacaatttttttaccaaaaacgtccctcctattctcaacttaaagtcttctggtgtctctgttttccattcatcccttcca |
18031526 |
T |
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| Q |
164 |
ctacaagaaatagacttaaagcaagatcaacaccatgtgtatttttagg |
212 |
Q |
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| T |
18031527 |
ctagtagaaataaactccaaccaaggtcaacaccatatgtcttcttagg |
18031575 |
T |
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