View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5039_1D_low_59 (Length: 212)

Name: NF5039_1D_low_59
Description: NF5039_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5039_1D_low_59
NF5039_1D_low_59
[»] chr4 (4 HSPs)
chr4 (1-135)||(31051178-31051312)
chr4 (17-87)||(38929131-38929201)
chr4 (17-81)||(8254397-8254461)
chr4 (17-81)||(8267815-8267879)
[»] chr2 (5 HSPs)
chr2 (10-129)||(2062251-2062369)
chr2 (17-101)||(31902945-31903029)
chr2 (15-79)||(22886070-22886134)
chr2 (2-127)||(27739150-27739275)
chr2 (16-69)||(29486398-29486451)
[»] chr5 (3 HSPs)
chr5 (17-92)||(22687204-22687279)
chr5 (30-81)||(27712429-27712480)
chr5 (17-75)||(697722-697780)
[»] chr1 (5 HSPs)
chr1 (17-109)||(19597954-19598046)
chr1 (27-101)||(31586262-31586336)
chr1 (10-75)||(46693481-46693546)
chr1 (26-79)||(4651229-4651282)
chr1 (15-99)||(41919896-41919980)
[»] chr8 (4 HSPs)
chr8 (12-101)||(9519052-9519141)
chr8 (17-75)||(37987518-37987576)
chr8 (15-99)||(34866620-34866704)
chr8 (15-63)||(34389612-34389660)
[»] chr7 (2 HSPs)
chr7 (16-79)||(38484990-38485053)
chr7 (17-79)||(3420242-3420304)
[»] chr3 (1 HSPs)
chr3 (31-101)||(25595169-25595239)


Alignment Details
Target: chr4 (Bit Score: 115; Significance: 1e-58; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 31051312 - 31051178
Alignment:
Q  1 gcctttttgcgatttgggttgtgtgtccgcttcagaccggcgtcgctactcgtgttttgttgttaggttacatcttcctttagatttgtgttggtgttgc 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  31051312 gcctttttacgatttgggttgtgtgtccgcttcagaccggcgtcgctgcccgtgttttgttgttgggttacatcttcctttagatttgtgttggtgttgc 31051213  T
Q  101 tacctgtttttgtgatgaggtggtttggcgatatt 135  Q
    |||||||||||||||||||||||||||||| ||||    
T  31051212 tacctgtttttgtgatgaggtggtttggcggtatt 31051178  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 38929131 - 38929201
Alignment:
Q  17 ggttgtgtgtccgcttcagaccggcgtcgctactcgtgttttgttgttaggttacatcttcctttagattt 87  Q
    |||||||| ||||||||||||||||||| || | |||||||||||||||| |  ||||||||||| |||||    
T  38929131 ggttgtgtttccgcttcagaccggcgtcactgcccgtgttttgttgttagttatcatcttccttttgattt 38929201  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 8254397 - 8254461
Alignment:
Q  17 ggttgtgtgtccgcttcagaccggcgtcgctactcgtgttttgttgttaggttacatcttccttt 81  Q
    |||||||| ||| |||||||||| ||||| | | ||||| |||||||| |||| |||||||||||    
T  8254397 ggttgtgtctccacttcagaccgacgtcgatgcccgtgtcttgttgttgggtttcatcttccttt 8254461  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 8267815 - 8267879
Alignment:
Q  17 ggttgtgtgtccgcttcagaccggcgtcgctactcgtgttttgttgttaggttacatcttccttt 81  Q
    |||||||| ||| |||||||||| ||||| | | ||||| |||||||| |||| |||||||||||    
T  8267815 ggttgtgtctccacttcagaccgacgtcgatgcccgtgtcttgttgttgggtttcatcttccttt 8267879  T

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Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 10 - 129
Target Start/End: Original strand, 2062251 - 2062369
Alignment:
Q  10 cgatttgggttgtgtgtccgcttcagaccggcgtcgctactcgtgttttgttgttaggttacatcttcctttagatttgtgttggtgttgctacctgttt 109  Q
    |||| |||||||||| |||||||||||||||||||||| | |||||||||||||| |||| |||||| || | ||| |||||| |||| ||| || ||||    
T  2062251 cgatctgggttgtgtttccgcttcagaccggcgtcgctgcccgtgttttgttgttgggttgcatctttctcttgatctgtgtttgtgtagcttccagttt 2062350  T
Q  110 ttgtgatgaggtggtttggc 129  Q
     | || ||||||||||||||    
T  2062351 ct-tggtgaggtggtttggc 2062369  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 31903029 - 31902945
Alignment:
Q  17 ggttgtgtgtccgcttcagaccggcgtcgctactcgtgttttgttgttaggttacatcttcctttagatttgtgttggtgttgct 101  Q
    |||||||| ||||||||| |||||||||||| | |||||||||||||| |||| | ||||||| ||||| | |||| ||||||||    
T  31903029 ggttgtgtttccgcttcaaaccggcgtcgctgcccgtgttttgttgttgggtttcgtcttcctctagatctatgttagtgttgct 31902945  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 22886134 - 22886070
Alignment:
Q  15 tgggttgtgtgtccgcttcagaccggcgtcgctactcgtgttttgttgttaggttacatcttcct 79  Q
    |||||| ||| |||||||||||| ||||||||||  |||||||||||||| |||| |||||||||    
T  22886134 tgggttttgtttccgcttcagactggcgtcgctatccgtgttttgttgttgggtttcatcttcct 22886070  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 2 - 127
Target Start/End: Original strand, 27739150 - 27739275
Alignment:
Q  2 cctttttgcgatttgggttgtgtgtccgcttcagaccggcgtcgctactcgtgttttgttgttaggttacatcttcctttagatttgtg-ttggtgttgc 100  Q
    ||||||| |||| || ||||||| ||||||||||  || ||||||| |  ||||||||||||| |||| ||||||||| | |||||||| || |||| ||    
T  27739150 ccttttttcgatctgcgttgtgtttccgcttcagggcgacgtcgctgcctgtgttttgttgtttggtttcatcttcctcttgatttgtgatttgtgtggc 27739249  T
Q  101 tacctgtttttgtgatgaggtggtttg 127  Q
    | | ||||| | |||||||||||||||    
T  27739250 tgcttgtttct-tgatgaggtggtttg 27739275  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 29486398 - 29486451
Alignment:
Q  16 gggttgtgtgtccgcttcagaccggcgtcgctactcgtgttttgttgttaggtt 69  Q
    ||||||||| |||||||||||||||||||||| | |  ||||||||||| ||||    
T  29486398 gggttgtgtttccgcttcagaccggcgtcgctgcccaagttttgttgtttggtt 29486451  T

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Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 22687279 - 22687204
Alignment:
Q  17 ggttgtgtgtccgcttcagaccggcgtcgctactcgtgttttgttgttaggttacatcttcctttagatttgtgtt 92  Q
    |||||||| ||||||||||||  | |||||| ||||||||||||||||||||| ||||||||||| ||| ||||||    
T  22687279 ggttgtgtttccgcttcagacttgtgtcgctgctcgtgttttgttgttaggtttcatcttccttttgatatgtgtt 22687204  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 27712429 - 27712480
Alignment:
Q  30 cttcagaccggcgtcgctactcgtgttttgttgttaggttacatcttccttt 81  Q
    |||||||||||||||| | | |||||||||||||| |||| |||||||||||    
T  27712429 cttcagaccggcgtcgttgcccgtgttttgttgttgggtttcatcttccttt 27712480  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 697722 - 697780
Alignment:
Q  17 ggttgtgtgtccgcttcagaccggcgtcgctactcgtgttttgttgttaggttacatct 75  Q
    ||||| || |||||||||||||||||||||| | |||||  |||||||||||| |||||    
T  697722 ggttgagtttccgcttcagaccggcgtcgctgcccgtgtgctgttgttaggtttcatct 697780  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 19597954 - 19598046
Alignment:
Q  17 ggttgtgtgtccgcttcagaccggcgtcgctactcgtgttttgttgttaggttacatcttcctttagatttgtgttggtgttgctacctgttt 109  Q
    |||||||| ||| |||||||||||||||| | | |||||| ||||||| |||| ||||||||||| | |||||||| | |||||| |||||||    
T  19597954 ggttgtgtttccacttcagaccggcgtcgttgcccgtgttctgttgttgggtttcatcttccttttggtttgtgtttgggttgctgcctgttt 19598046  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 31586336 - 31586262
Alignment:
Q  27 ccgcttcagaccggcgtcgctactcgtgttttgttgttaggttacatcttcctttagatttgtgttggtgttgct 101  Q
    ||||||||||||||||||||| | |||||||||||||| |||| | |||| || | |||||||||  ||||||||    
T  31586336 ccgcttcagaccggcgtcgctgcccgtgttttgttgttgggtttcgtctttctctggatttgtgtcagtgttgct 31586262  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 46693546 - 46693481
Alignment:
Q  10 cgatttgggttgtgtgtccgcttcagaccggcgtcgctactcgtgttttgttgttaggttacatct 75  Q
    |||||| ||||| || |||||||||||||||||||||| | |||||| ||||||||| || |||||    
T  46693546 cgatttaggttgagtttccgcttcagaccggcgtcgctgcccgtgttctgttgttagttttcatct 46693481  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 4651229 - 4651282
Alignment:
Q  26 tccgcttcagaccggcgtcgctactcgtgttttgttgttaggttacatcttcct 79  Q
    ||||||||| ||||| |||||| || |||||||||||||||||| | |||||||    
T  4651229 tccgcttcaaaccggtgtcgctgcttgtgttttgttgttaggtttcgtcttcct 4651282  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 41919896 - 41919980
Alignment:
Q  15 tgggttgtgtgtccgcttcagaccggcgtcgctactcgtgttttgttgttaggttacatcttcctttagatttgtgttggtgttg 99  Q
    |||||||||  ||||||||| ||| |||||| | | |||||||||||||  | || ||||||||| ||||||| |||| ||||||    
T  41919896 tgggttgtggttccgcttcaaaccagcgtcgttgcccgtgttttgttgtgggatttcatcttcctctagatttatgtttgtgttg 41919980  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 9519052 - 9519141
Alignment:
Q  12 atttgggttgtgtgtccgcttcagaccggcgtcgctactcgtgttttgttgttaggttacatcttcctttagatttgtgttggtgttgct 101  Q
    |||||||||||||  |||||||| ||| |||||||| | |||||||||||||| |||| | |||| || |||||||||||| || |||||    
T  9519052 atttgggttgtgttcccgcttcaaaccagcgtcgctgcccgtgttttgttgttgggtttcgtctttctctagatttgtgtttgtattgct 9519141  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 37987576 - 37987518
Alignment:
Q  17 ggttgtgtgtccgcttcagaccggcgtcgctactcgtgttttgttgttaggttacatct 75  Q
    ||||| || |||||||||||||||||||||| | |||||| |||||||||||| |||||    
T  37987576 ggttgagtttccgcttcagaccggcgtcgctgcccgtgttatgttgttaggtttcatct 37987518  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 34866704 - 34866620
Alignment:
Q  15 tgggttgtgtgtccgcttcagaccggcgtcgctactcgtgttttgttgttaggttacatcttcctttagatttgtgttggtgttg 99  Q
    |||||||||  ||||||||| |||||||||||| | |||||||||||||| | || | ||||||| || |||| |||| ||||||    
T  34866704 tgggttgtggttccgcttcaaaccggcgtcgctgcccgtgttttgttgttggatttcgtcttcctctaaatttatgtttgtgttg 34866620  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 34389660 - 34389612
Alignment:
Q  15 tgggttgtgtgtccgcttcagaccggcgtcgctactcgtgttttgttgt 63  Q
    |||||||||  ||||||||| |||||||||||| | |||||||||||||    
T  34389660 tgggttgtgcttccgcttcaaaccggcgtcgctgcccgtgttttgttgt 34389612  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 38484990 - 38485053
Alignment:
Q  16 gggttgtgtgtccgcttcagaccggcgtcgctactcgtgttttgttgttaggttacatcttcct 79  Q
    ||||||||| ||||||||| |||||||||||| | | ||||||||||| ||||| | |||||||    
T  38484990 gggttgtgtttccgcttcaaaccggcgtcgctgcccatgttttgttgtcaggtttcgtcttcct 38485053  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 3420304 - 3420242
Alignment:
Q  17 ggttgtgtgtccgcttcagaccggcgtcgctactcgtgttttgttgttaggttacatcttcct 79  Q
    |||||||  ||||||||  |||||||||||| |||||||||||||||| |||| | |||||||    
T  3420304 ggttgtggttccgcttcgaaccggcgtcgctgctcgtgttttgttgtttggtttcgtcttcct 3420242  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 101
Target Start/End: Complemental strand, 25595239 - 25595169
Alignment:
Q  31 ttcagaccggcgtcgctactcgtgttttgttgttaggttacatcttcctttagatttgtgttggtgttgct 101  Q
    ||||||||| |||| |||| ||||||||||||||| ||| | || |||| ||||||||| || ||||||||    
T  25595239 ttcagaccgtcgtcactacacgtgttttgttgttatgtttcgtcatcctctagatttgtttttgtgttgct 25595169  T

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