View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5039_1D_low_60 (Length: 211)
Name: NF5039_1D_low_60
Description: NF5039_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_1D_low_60 |
 | |
|
| [»] scaffold0713 (1 HSPs) |
| | |
|
| [»] scaffold0002 (4 HSPs) |
| | |
|
| [»] scaffold0014 (1 HSPs) |
| | |
|
| [»] scaffold0012 (1 HSPs) |
| | |
|
| [»] scaffold0654 (2 HSPs) |
| | |
|
| [»] scaffold0406 (1 HSPs) |
| | |
|
| [»] scaffold0016 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 133; Significance: 2e-69; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 16101316 - 16101488
Alignment:
| Q |
1 |
tcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccgg |
100 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
16101316 |
tcattttaagtgaaagtcaacttgaaaattgtttaaattatagtttgtcaagtgtagtcaataggcttgccggactaggatgctctagttcgtgcgccgg |
16101415 |
T |
|
| Q |
101 |
ccacgaaattgaattttgggtcgtgacaaagttggtatcagagctc-ggttgtaggtcctaatagctgcagac |
172 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
16101416 |
tcacgatattgaattttgggtcgtgacaaagttggtatcagagctctggttgtaggtcctactagctgcagac |
16101488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 14654841 - 14655013
Alignment:
| Q |
1 |
tcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccgg |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
14654841 |
tcattttaagtgaaagtcaatttgaaaattatttaaattatagtttgtcaagtgttgtcattaggcttgccggactaggatgttctagttcgtgcgccgg |
14654940 |
T |
|
| Q |
101 |
ccacgaaattgaa-ttttgggtcgtgacaaagttggtatcagagctcggttgtaggtcctaatagctgcagac |
172 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14654941 |
tcacgattgtgaatttttgggtcgtgacaaagttggtatcagagctcggttgtaggtcctaatagctgcagac |
14655013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 16104772 - 16104900
Alignment:
| Q |
1 |
tcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccgg |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
16104772 |
tcattttaagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagtgtagtcaataggcttgccggactaggatgctctagttcgtgcgccgg |
16104871 |
T |
|
| Q |
101 |
ccacgaaattgaattttgggtcgtgacaa |
129 |
Q |
| |
|
||||| |||||||||||||||||||||| |
|
|
| T |
16104872 |
tcacgatattgaattttgggtcgtgacaa |
16104900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 19657016 - 19656889
Alignment:
| Q |
1 |
tcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccgg |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
19657016 |
tcattataagtgaaagtaaatttgaaaattgtttaaattatagtttgtcaaggattgtcaataggcttgccggactaggatgctctagttcgtgcgccgg |
19656917 |
T |
|
| Q |
101 |
ccacgaaattgaattttgggtcgtgaca |
128 |
Q |
| |
|
||||| ||||||| ||||||||||||| |
|
|
| T |
19656916 |
tcacgatattgaatcttgggtcgtgaca |
19656889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 14650841 - 14650969
Alignment:
| Q |
1 |
tcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccgg |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
14650841 |
tcattttaagtgaaagtcaatttgaaaattatttaaattatagtttgtcaagtgttgtcattaggcttgccggactaggatgttctagttcgtgcgccgg |
14650940 |
T |
|
| Q |
101 |
ccacgaaattgaa-ttttgggtcgtgaca |
128 |
Q |
| |
|
||||| |||| ||||||||||||||| |
|
|
| T |
14650941 |
tcacgattgtgaatttttgggtcgtgaca |
14650969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 14660632 - 14660760
Alignment:
| Q |
1 |
tcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccgg |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
14660632 |
tcattttaagtgaaagtcaatttgaaaattatttaaattatagtttgtcaagtgttgtcattaggcttgccggactaggatgttctagttcgtgcgccgg |
14660731 |
T |
|
| Q |
101 |
ccacgaaattgaa-ttttgggtcgtgaca |
128 |
Q |
| |
|
||||| |||| ||||||||||||||| |
|
|
| T |
14660732 |
tcacgattgtgaatttttgggtcgtgaca |
14660760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 17478342 - 17478215
Alignment:
| Q |
1 |
tcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccgg |
100 |
Q |
| |
|
||||| |||||||||||||||||| ||| ||||| ||||||||||||||||| ||||||||| ||||||||| ||||||||| ||||||||||| ||||| |
|
|
| T |
17478342 |
tcattttaagtgaaagtcaatttggaaaatgtttgaattatagtttgtcaagtgttgtcaattggcttgccgaactaggatgttctagttcgtgcgccgg |
17478243 |
T |
|
| Q |
101 |
ccacgaaattgaattttgggtcgtgaca |
128 |
Q |
| |
|
||||| ||||||||||||||||||| |
|
|
| T |
17478242 |
tcacgattgtgaattttgggtcgtgaca |
17478215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 14 - 128
Target Start/End: Complemental strand, 29287817 - 29287704
Alignment:
| Q |
14 |
aagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggccacgaaattgaa |
113 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||| ||||||||||| ||||| ||||| |||| |
|
|
| T |
29287817 |
aagtcaaattgaaaattgtttaaattatagtt-gtcaagtgtcgtcaataggcttgccggactaggatgttctagttcgtgcgccggtcacgatcgtgaa |
29287719 |
T |
|
| Q |
114 |
ttttgggtcgtgaca |
128 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
29287718 |
ttttgggtcgtgaca |
29287704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 60 - 128
Target Start/End: Complemental strand, 17652875 - 17652807
Alignment:
| Q |
60 |
aataggcttgccggactaggatgctctagttcgtgtgccggccacgaaattgaattttgggtcgtgaca |
128 |
Q |
| |
|
|||||||||||||| |||| ||| ||||||||||| ||||| ||||| ||||||||||||||||||||| |
|
|
| T |
17652875 |
aataggcttgccgggctagaatgatctagttcgtgcgccggtcacgatattgaattttgggtcgtgaca |
17652807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 117; Significance: 9e-60; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 7688541 - 7688409
Alignment:
| Q |
12 |
gaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggccacgaaattg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
7688541 |
gaaagtcaatttgaaaattgtttaaattatagtttgtcaagggtcgtcaataggcttgccggactaggatgctctagttcgtgcgccggtcacgaaattg |
7688442 |
T |
|
| Q |
112 |
aattttgggtcgtgacaaagttggtatcagagc |
144 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |
|
|
| T |
7688441 |
aattttaggtcgtgacaaagttggtatcagagc |
7688409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 5705192 - 5705065
Alignment:
| Q |
1 |
tcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccgg |
100 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| | ||||| |
|
|
| T |
5705192 |
tcattctaagtgaaagtcagtttgaaaattgtttaaattatagtttgtcaagggtcgtcaataggcttgccggactaggatgtcttagttcgagcgccgg |
5705093 |
T |
|
| Q |
101 |
ccacgaaattgaattttgggtcgtgaca |
128 |
Q |
| |
|
||||| ||||||||||||||||||||| |
|
|
| T |
5705092 |
tcacgatattgaattttgggtcgtgaca |
5705065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 28104386 - 28104514
Alignment:
| Q |
1 |
tcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccgg |
100 |
Q |
| |
|
||||| ||||||||||||||||||||| || | ||||||||||||||||||| || |||| ||||||||||||||||||||| |||||||| || ||||| |
|
|
| T |
28104386 |
tcattttaagtgaaagtcaatttgaaatttatctaaattatagtttgtcaagtgtcgtcattaggcttgccggactaggatgttctagttcatgcgccgg |
28104485 |
T |
|
| Q |
101 |
ccacgaaattgaa-ttttgggtcgtgaca |
128 |
Q |
| |
|
|||||| |||| ||||||||||||||| |
|
|
| T |
28104486 |
tcacgaatgtgaatttttgggtcgtgaca |
28104514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 28058137 - 28058009
Alignment:
| Q |
1 |
tcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccgg |
100 |
Q |
| |
|
||||| ||||||||||| ||||||||| || | |||||||||||||||||| ||||| | ||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
28058137 |
tcattttaagtgaaagtaaatttgaaatttatctaaattatagtttgtcaactgttgttattaggcttgccggactaggatgttctagttcgtgcgccgg |
28058038 |
T |
|
| Q |
101 |
ccacgaaattgaa-ttttgggtcgtgaca |
128 |
Q |
| |
|
||| || |||| ||||||||||||||| |
|
|
| T |
28058037 |
tcacaaatgtgaatttttgggtcgtgaca |
28058009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 28068562 - 28068434
Alignment:
| Q |
1 |
tcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccgg |
100 |
Q |
| |
|
||||| ||||||||||| ||||||||| || | |||||||||||||||||| ||||| | ||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
28068562 |
tcattttaagtgaaagtaaatttgaaatttatctaaattatagtttgtcaactgttgttattaggcttgccggactaggatgttctagttcgtgcgccgg |
28068463 |
T |
|
| Q |
101 |
ccacgaaattgaa-ttttgggtcgtgaca |
128 |
Q |
| |
|
||| || |||| ||||||||||||||| |
|
|
| T |
28068462 |
tcacaaatgtgaatttttgggtcgtgaca |
28068434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 19435605 - 19435710
Alignment:
| Q |
22 |
ttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggccacgaaattgaattttgggt |
121 |
Q |
| |
|
|||||||||||||||||||||||| |||||| || |||||||| |||| |||| ||| ||| ||||||||||| ||||| ||||| |||||||||||| |
|
|
| T |
19435605 |
ttgaaaattgtttaaattatagtt-gtcaagtgtcgtcaatagacttgtcggattagaatgttctagttcgtgcgccggtcacgattgtgaattttgggt |
19435703 |
T |
|
| Q |
122 |
cgtgaca |
128 |
Q |
| |
|
||||||| |
|
|
| T |
19435704 |
cgtgaca |
19435710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 5e-52; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 5519102 - 5518931
Alignment:
| Q |
1 |
tcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccgg |
100 |
Q |
| |
|
||||| |||||||| || |||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||| |||| ||||||||||| ||||| |
|
|
| T |
5519102 |
tcattttaagtgaatttcgatttaaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccggactatgatgttctagttcgtgcgccgg |
5519003 |
T |
|
| Q |
101 |
ccacgaaattgaattttgggtcgtgacaaagttggtatcagagctcggttgtaggtcctaatagctgcagac |
172 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
5519002 |
tcacgattgtgaattttgggtcgtgacaaagttggtatcagagcccggttgtaggtcctaataactgcagac |
5518931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 20 - 128
Target Start/End: Original strand, 42786077 - 42786185
Alignment:
| Q |
20 |
atttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggccacgaaattgaattttgg |
119 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||| || |||||||||||||||||||||||||| ||||||||||| ||||| ||||| | |||||||| |
|
|
| T |
42786077 |
atttaaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccggactaggatgttctagttcgtgcgccggtcacgattataaattttgg |
42786176 |
T |
|
| Q |
120 |
gtcgtgaca |
128 |
Q |
| |
|
||||||||| |
|
|
| T |
42786177 |
gtcgtgaca |
42786185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 27197908 - 27197778
Alignment:
| Q |
1 |
tcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccgg |
100 |
Q |
| |
|
||||| ||||||||||||||||| |||||| |||| |||||||||||||||| ||||||| ||| ||||||| ||||||||| ||||||||||| |||| |
|
|
| T |
27197908 |
tcattttaagtgaaagtcaatttaaaaattatttatattatagtttgtcaagtgttgtcattagacttgccgaactaggatgttctagttcgtgcgccga |
27197809 |
T |
|
| Q |
101 |
ccacgaaattgaa-ttttgggtcgtgacaaa |
130 |
Q |
| |
|
||||| |||| ||||||||||||||||| |
|
|
| T |
27197808 |
tcacgattgtgaatttttgggtcgtgacaaa |
27197778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 15599416 - 15599502
Alignment:
| Q |
8 |
aagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtg |
94 |
Q |
| |
|
|||||||| |||| ||| |||| || |||||| | | ||||||| || |||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
15599416 |
aagtgaaattcaaattggaaatagtctaaatttttgcgtgtcaagtgtcgtcaataggcttgccgaactaggatgttctagttcgtg |
15599502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 1e-49; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 10416514 - 10416641
Alignment:
| Q |
1 |
tcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccgg |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10416514 |
tcattttaagtgaaagtcaatttgaaaattgtttaaattgtagtttgtcaagtgtcgtcaataggcttgccggactaggatgctctagttcgtgcgccgg |
10416613 |
T |
|
| Q |
101 |
ccacgaaattgaattttgggtcgtgaca |
128 |
Q |
| |
|
||||| ||||||||||||||||||||| |
|
|
| T |
10416614 |
tcacgatattgaattttgggtcgtgaca |
10416641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 4698470 - 4698597
Alignment:
| Q |
1 |
tcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccgg |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| |||||||| || ||||| |
|
|
| T |
4698470 |
tcattacaagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggtcgttaatagacttgccggactaggatgttctagttcatgcgccgg |
4698569 |
T |
|
| Q |
101 |
ccacgaaattgaattttgggtcgtgaca |
128 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
4698570 |
tcacgaaattgaattttgggtcgtgaca |
4698597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 808285 - 808176
Alignment:
| Q |
20 |
atttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggccacgaaattgaattttgg |
119 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||| || |||||||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||| |
|
|
| T |
808285 |
atttaaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccggactaggatgttctagttcgtgcgccggtcacgattgtgaattttgg |
808186 |
T |
|
| Q |
120 |
gtcgtgacaa |
129 |
Q |
| |
|
|||||||||| |
|
|
| T |
808185 |
gtcgtgacaa |
808176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 2588428 - 2588533
Alignment:
| Q |
22 |
ttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggccacgaaattgaattttgggt |
121 |
Q |
| |
|
|||||||||||||||| ||||||| | |||| || |||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||||||||| |
|
|
| T |
2588428 |
ttgaaaattgtttaaactatagtt-gccaagtgtcgtcaataggcttgccggactaggatgttctagttcgtgcgccgttcacgattgtgaattttgggt |
2588526 |
T |
|
| Q |
122 |
cgtgaca |
128 |
Q |
| |
|
||||||| |
|
|
| T |
2588527 |
cgtgaca |
2588533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 9310639 - 9310583
Alignment:
| Q |
116 |
ttgggtcgtgacaaagttggtatcagagctcggttgtaggtcctaatagctgcagac |
172 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9310639 |
ttgggtcgtgacaaagttgatatcagagcccggttgtaggtcctaatagctgcagac |
9310583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 60 - 128
Target Start/End: Original strand, 44324742 - 44324810
Alignment:
| Q |
60 |
aataggcttgccggactaggatgctctagttcgtgtgccggccacgaaattgaattttgggtcgtgaca |
128 |
Q |
| |
|
|||||||||||||| |||| ||| ||||||||||| ||||| ||||| ||||||||||||||||||||| |
|
|
| T |
44324742 |
aataggcttgccgggctagaatgatctagttcgtgcgccggtcacgatattgaattttgggtcgtgaca |
44324810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 150
Target Start/End: Complemental strand, 20702622 - 20702588
Alignment:
| Q |
116 |
ttgggtcgtgacaaagttggtatcagagctcggtt |
150 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |
|
|
| T |
20702622 |
ttgggtcgtgacaaagttggtatcagagcccggtt |
20702588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 45333308 - 45333356
Alignment:
| Q |
58 |
tcaataggcttgccggactaggatgctctagttcgtgtgccggccacga |
106 |
Q |
| |
|
|||||||||||||||| |||| ||| ||||||||||| ||||| ||||| |
|
|
| T |
45333308 |
tcaataggcttgccgggctagaatgttctagttcgtgcgccggtcacga |
45333356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 5e-46; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 33063683 - 33063812
Alignment:
| Q |
1 |
tcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccgg |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
33063683 |
tcattttaagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagtgtcgtcaataggcttgccggactagggtgctctagttcgtacgccgg |
33063782 |
T |
|
| Q |
101 |
ccacgaaattgaattttgggtcgtgacaaa |
130 |
Q |
| |
|
|| || ||||||||||||||||||||||| |
|
|
| T |
33063783 |
tcatgatattgaattttgggtcgtgacaaa |
33063812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 2 - 116
Target Start/End: Original strand, 30130911 - 30131025
Alignment:
| Q |
2 |
cattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggc |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||| |||| |
|
|
| T |
30130911 |
cattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggtcgtcaataggctttccggactaggaagctctagttcgtgcgccgat |
30131010 |
T |
|
| Q |
102 |
cacgaaattgaattt |
116 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
30131011 |
cacgaaattgaattt |
30131025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 27527818 - 27527946
Alignment:
| Q |
1 |
tcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccgg |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||| | ||| |
|
|
| T |
27527818 |
tcattttaagtgaaagtcaatttgaaaattatttaaattatagtttgtcaagtgttgtcattaggcttgccggactaggatgttctagttcgtgcgtcgg |
27527917 |
T |
|
| Q |
101 |
ccacgaaattgaa-ttttgggtcgtgaca |
128 |
Q |
| |
|
||||| |||| ||||||||||||||| |
|
|
| T |
27527918 |
tcacgattgtgaatttttgggtcgtgaca |
27527946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 33056204 - 33056334
Alignment:
| Q |
1 |
tcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaag---ggttgtcaataggcttgccggactaggatgctctagttcgtgtgc |
97 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||| |||||||||| | |||||||||||| || |
|
|
| T |
33056204 |
tcattttaagtgaaagtcaatttaaaaattgtttaaattatagtttgtcaagtgtcgtcgtcaataggcttaccggactagggtactctagttcgtgcgc |
33056303 |
T |
|
| Q |
98 |
cggccacgaaattgaattttgggtcgtgaca |
128 |
Q |
| |
|
||| ||||| ||||||||||||||| ||||| |
|
|
| T |
33056304 |
cggtcacgatattgaattttgggtcttgaca |
33056334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 14 - 119
Target Start/End: Complemental strand, 15970066 - 15969961
Alignment:
| Q |
14 |
aagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggccacgaaattgaa |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || |||| ||| |||||||| ||| |||| |||| |||||| ||||| ||||| |||| |
|
|
| T |
15970066 |
aagtcaatttgaaaattgtttaaattatagtttgtcaagtgtcgtcattagacttgccgggctacgatgttctatttcgtgcgccggtcacgattgtgaa |
15969967 |
T |
|
| Q |
114 |
ttttgg |
119 |
Q |
| |
|
|||||| |
|
|
| T |
15969966 |
ttttgg |
15969961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 23 - 128
Target Start/End: Original strand, 28041304 - 28041408
Alignment:
| Q |
23 |
tgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggccacgaaattgaattttgggtc |
122 |
Q |
| |
|
||||||||||||||||||||||| | |||| || ||||||| |||| ||| ||||||||| ||||||||||| ||||| ||||| ||||||||||||| |
|
|
| T |
28041304 |
tgaaaattgtttaaattatagtt-gccaagtgtcgtcaataagcttaccgaactaggatgttctagttcgtgcgccggtcacgattgtgaattttgggtc |
28041402 |
T |
|
| Q |
123 |
gtgaca |
128 |
Q |
| |
|
|||||| |
|
|
| T |
28041403 |
gtgaca |
28041408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 60 - 128
Target Start/End: Original strand, 22014634 - 22014702
Alignment:
| Q |
60 |
aataggcttgccggactaggatgctctagttcgtgtgccggccacgaaattgaattttgggtcgtgaca |
128 |
Q |
| |
|
|||||||||||||| |||| ||| ||||||||||| ||||| ||||| ||||||||||||||||||||| |
|
|
| T |
22014634 |
aataggcttgccgggctagaatgatctagttcgtgcgccggtcacgatattgaattttgggtcgtgaca |
22014702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 27684718 - 27684774
Alignment:
| Q |
116 |
ttgggtcgtgacaaagttggtatcagagctcggttgtaggtcctaatagctgcagac |
172 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||| |
|
|
| T |
27684718 |
ttgggtcgtgacaaagttggtatcagagcccggttttaggtccaaatagctgcagac |
27684774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 6952786 - 6952903
Alignment:
| Q |
8 |
aagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggccacgaa |
107 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||| |||| || ||||||| ||||| | |||||| || ||||||| ||| |||| || || |
|
|
| T |
6952786 |
aagtgaaagttaatttaaaaattgtttaaattatagtttgccaagtgtcgtcaataagcttgtcatactaggttgttctagtttgtgcaccggtcaggat |
6952885 |
T |
|
| Q |
108 |
attgaattttgggtcgtg |
125 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
6952886 |
tttaaattttgggtcgtg |
6952903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 25477735 - 25477664
Alignment:
| Q |
57 |
gtcaataggcttgccggactaggatgctctagttcgtgtgccggccacgaaattgaattttgggtcgtgacaa |
129 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||||| |||| |||| ||||||||||||||| |
|
|
| T |
25477735 |
gtcaataggcttgccggactaggatgttctagttcgtgcgccggttacgattgtgaa-tttgggtcgtgacaa |
25477664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 28804127 - 28804255
Alignment:
| Q |
1 |
tcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccgg |
100 |
Q |
| |
|
||||| ||||||||| |||||| |||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28804127 |
tcattttaagtgaaaaacaatttaaaaattgtttaaattatagtttgtcaagtgtcatcaatagacttgccggactaggatgctctagttcgtgcgccgg |
28804226 |
T |
|
| Q |
101 |
ccacgaaattgaattttgggtcgtgacaa |
129 |
Q |
| |
|
||||| ||| |||||||||||||||||| |
|
|
| T |
28804227 |
tcacgatattaaattttgggtcgtgacaa |
28804255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 26525365 - 26525503
Alignment:
| Q |
1 |
tcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccgg |
100 |
Q |
| |
|
||||| |||||| ||||||| ||||||| | || |||||||||||||||||| || |||||||| |||| ||| |||| | | ||||||||||| ||||| |
|
|
| T |
26525365 |
tcattttaagtggaagtcaaattgaaaaattttcaaattatagtttgtcaagtgtcgtcaatagacttgtcgggctagaaagttctagttcgtgcgccgg |
26525464 |
T |
|
| Q |
101 |
ccacgaaattgaattttgggtcgtgacaaagttggtatc |
139 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
26525465 |
tcacgatattgaatttttggtcgtgacaaagttggtatc |
26525503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 5358221 - 5358102
Alignment:
| Q |
11 |
tgaaagtcaa-tttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggccacgaaat |
109 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||| ||||| ||||| | |
|
|
| T |
5358221 |
tgaaagtcaaatttgaaaattgtttaaattatagtttgtcaagtgtcgtcaataggcttgccggactaggatgttctagttcgtgcgccggtcacgattt |
5358122 |
T |
|
| Q |
110 |
tgaattttgggtcgtgacaa |
129 |
Q |
| |
|
| ||||||||||||||||| |
|
|
| T |
5358121 |
tagattttgggtcgtgacaa |
5358102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 30874010 - 30873893
Alignment:
| Q |
8 |
aagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggccacgaa |
107 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||| |||| ||||||| ||| ||||| ||||| |
|
|
| T |
30874010 |
aagtgaaggtcaatttaaaaattgtttaaattatagtttgtcaagtgtcgtcaataggcttgccggactaagatgttctagtttgtgcgccggtcacgat |
30873911 |
T |
|
| Q |
108 |
attgaattttgggtcgtg |
125 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
30873910 |
tttgaattttgggccgtg |
30873893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 22 - 128
Target Start/End: Complemental strand, 27560733 - 27560628
Alignment:
| Q |
22 |
ttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggccacgaaattgaattttgggt |
121 |
Q |
| |
|
|||||||||||||||||||||||| | |||| || |||||||||||||||| ||||||||| ||||||||||| ||||| ||||| |||||||||||| |
|
|
| T |
27560733 |
ttgaaaattgtttaaattatagtt-gccaagtgtcgtcaataggcttgccgaactaggatgttctagttcgtgcgccggtcacgattgtgaattttgggt |
27560635 |
T |
|
| Q |
122 |
cgtgaca |
128 |
Q |
| |
|
| ||||| |
|
|
| T |
27560634 |
cctgaca |
27560628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 34 - 128
Target Start/End: Original strand, 51534234 - 51534327
Alignment:
| Q |
34 |
taaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggccacgaaattgaattttgggtcgtgaca |
128 |
Q |
| |
|
|||||||||||| |||||| || |||||||||||||||||||||| ||| ||||||||||| ||||| ||||| ||||||||||||||||||| |
|
|
| T |
51534234 |
taaattatagtt-gtcaagtgtggtcaataggcttgccggactagaatgttctagttcgtgcgccggtcacgattgtgaattttgggtcgtgaca |
51534327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 34 - 128
Target Start/End: Complemental strand, 18693823 - 18693730
Alignment:
| Q |
34 |
taaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggccacgaaattgaattttgggtcgtgaca |
128 |
Q |
| |
|
|||||||||||| |||| | || |||||||||||||||||||||| ||| ||||||||||| ||||| ||||| ||||||||||||||||||| |
|
|
| T |
18693823 |
taaattatagtt-gtcatgtgtcgtcaataggcttgccggactagaatgttctagttcgtgcgccggtcacgattgtgaattttgggtcgtgaca |
18693730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 28602741 - 28602613
Alignment:
| Q |
1 |
tcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccgg |
100 |
Q |
| |
|
||||| |||||||| || ||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| |||| |||||| ||||| |
|
|
| T |
28602741 |
tcattttaagtgaatttcgatttgaaaattgtttaaattatagtttgtcaagtgtcgttaataggcttgccggactaggatgttctaattcgtgcgccgg |
28602642 |
T |
|
| Q |
101 |
ccacgaaattgaattttgggtcgtgacaa |
129 |
Q |
| |
|
||||| |||||||||||||||||||| |
|
|
| T |
28602641 |
tcacgattgtgaattttgggtcgtgacaa |
28602613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 15925508 - 15925635
Alignment:
| Q |
1 |
tcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccgg |
100 |
Q |
| |
|
||||| ||||||| | |||||||||||||||||||||||||| || ||||| | |||||||||||| ||||||||||||||||| || ||| ||||| |
|
|
| T |
15925508 |
tcattttaagtgagaaacaatttgaaaattgtttaaattataggttatcaagtgccatcaataggcttgacggactaggatgctctaatttgtgcgccgg |
15925607 |
T |
|
| Q |
101 |
ccacgaaattgaattttgggtcgtgaca |
128 |
Q |
| |
|
||||| ||| ||||||||||||||||| |
|
|
| T |
15925608 |
tcacgatattaaattttgggtcgtgaca |
15925635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 20 - 128
Target Start/End: Complemental strand, 4706259 - 4706151
Alignment:
| Q |
20 |
atttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggccacgaaattgaattttgg |
119 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||| || ||||| ||||||||||||||||||| ||||||| ||| ||||| ||||| |||||||||| |
|
|
| T |
4706259 |
atttaaaaattgtttaaattatagtttgttaagtgtcgtcaacgggcttgccggactaggatgttctagtttgtgcgccggtcacgattgtgaattttgg |
4706160 |
T |
|
| Q |
120 |
gtcgtgaca |
128 |
Q |
| |
|
||||||||| |
|
|
| T |
4706159 |
gtcgtgaca |
4706151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0713 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0713
Description:
Target: scaffold0713; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 1283 - 1388
Alignment:
| Q |
1 |
tcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccgg |
100 |
Q |
| |
|
||||| |||||| ||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||| ||||||||||||| ||||||||||| ||||| |
|
|
| T |
1283 |
tcattttaagtgtaagtcaatttgaaaattatttaaattatagtttgtcaagtgttgtcattaggctttccggactaggatgttctagttcgtgcgccgg |
1382 |
T |
|
| Q |
101 |
ccacga |
106 |
Q |
| |
|
||||| |
|
|
| T |
1383 |
tcacga |
1388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 36 - 133
Target Start/End: Original strand, 10306 - 10403
Alignment:
| Q |
36 |
aattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggccacgaaattgaattttgggtcgtgacaaagtt |
133 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| |||||||||||||||||||||| |
|
|
| T |
10306 |
aattatagtttgtcaagtgtcatcaataggcttgccggactaggatgctctagttcgtgcgccggtcacgatattaaattttgggtcgtgacaaagtt |
10403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 406580 - 406455
Alignment:
| Q |
1 |
tcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccgg |
100 |
Q |
| |
|
||||| ||||||||||||||||| |||||| ||||||||||||||||||||| | ||||||||| || | ||| |||||| ||||||||||| |||| |
|
|
| T |
406580 |
tcattttaagtgaaagtcaatttaaaaattatttaaattatagtttgtcaagtttcgtcaataggttttactgacaaggatgttctagttcgtgcgccga |
406481 |
T |
|
| Q |
101 |
ccacgaaattgaattttgggtcgtga |
126 |
Q |
| |
|
||||| |||||||||||||||||| |
|
|
| T |
406480 |
tcacgattttgaattttgggtcgtga |
406455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 412579 - 412530
Alignment:
| Q |
2 |
cattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaa |
51 |
Q |
| |
|
|||| ||||||||||||||||| |||||| ||||||||||||||| |||| |
|
|
| T |
412579 |
cattttaagtgaaagtcaatttaaaaattatttaaattatagtttctcaa |
412530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 423951 - 423901
Alignment:
| Q |
1 |
tcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaag |
52 |
Q |
| |
|
||||| ||||||||| ||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
423951 |
tcattttaagtgaaaatcaatttaaaaattgtttaaa-tatagtttgtcaag |
423901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 115390 - 115262
Alignment:
| Q |
1 |
tcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccgg |
100 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||||||||| ||||||| || |||||||| |||||| || |||||| ||||||||||| |||| |
|
|
| T |
115390 |
tcattttaagtgaaaatcaatttgaaaattgtttaaattatagtgtgtcaagtgtcgtcaatagacttgcctgattaggatattctagttcgtgcgccga |
115291 |
T |
|
| Q |
101 |
ccacgaaattgaattttgggtcgtgacaa |
129 |
Q |
| |
|
|| || |||||||||||||||||||| |
|
|
| T |
115290 |
tcatgattgtgaattttgggtcgtgacaa |
115262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 233174 - 233054
Alignment:
| Q |
8 |
aagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggccacgaa |
107 |
Q |
| |
|
||||||||||||| ||| |||| || | |||| || ||||||||| ||||||||||| ||||||| ||||||||| ||||||||||| ||||| ||||| |
|
|
| T |
233174 |
aagtgaaagtcaaattggaaatagtctgaattttaatttgtcaagtgttgtcaatagacttgccgaactaggatgttctagttcgtgcgccggtcacgat |
233075 |
T |
|
| Q |
108 |
attgaattttgggtcgtgaca |
128 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
233074 |
tgtgaattttgggtcgtgaca |
233054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0654 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: scaffold0654
Description:
Target: scaffold0654; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 9 - 129
Target Start/End: Complemental strand, 4077 - 3957
Alignment:
| Q |
9 |
agtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggccacgaaa |
108 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||| || |||| || || ||||| |||||| |||||||||| ||||||||||| |||| ||| | |
|
|
| T |
4077 |
agtgaaaatcaatttaaaaattgtttaaattatagtgtgccaagtgtcgttaatagacttgcctgactaggatgttctagttcgtgcgccgatcactatt |
3978 |
T |
|
| Q |
109 |
ttgaattttgggtcgtgacaa |
129 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
3977 |
gtgaattttgggtcgtgacaa |
3957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0654; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 9 - 129
Target Start/End: Complemental strand, 5431 - 5309
Alignment:
| Q |
9 |
agtgaaagtcaatttgaaaattgtttaaattata--gtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggccacga |
106 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||| || ||||||| || |||||||| |||||| |||||||||| ||||||||||| |||| ||| | |
|
|
| T |
5431 |
agtgaaaatcaatttaaaaattgtttaaattatatagtgtgtcaagtgtcgtcaatagacttgcctgactaggatgttctagttcgtgcgccgatcacta |
5332 |
T |
|
| Q |
107 |
aattgaattttgggtcgtgacaa |
129 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
5331 |
ttgtgaattttgggtcgtgacaa |
5309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0406 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0406
Description:
Target: scaffold0406; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 28 - 130
Target Start/End: Original strand, 4129 - 4229
Alignment:
| Q |
28 |
attgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggccacgaaattgaattttgggtcgtgac |
127 |
Q |
| |
|
|||||||||||||||||| | |||| || |||||||||||||| ||||||||||| ||||||||||| ||||| ||||| |||| ||||||||||||| |
|
|
| T |
4129 |
attgtttaaattatagtt-gccaagtgtcgtcaataggcttgctggactaggatgttctagttcgtgcgccggtcacgattgtgaa-tttgggtcgtgac |
4226 |
T |
|
| Q |
128 |
aaa |
130 |
Q |
| |
|
||| |
|
|
| T |
4227 |
aaa |
4229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 172
Target Start/End: Original strand, 76660 - 76721
Alignment:
| Q |
111 |
gaattttgggtcgtgacaaagttggtatcagagctcggttgtaggtcctaatagctgcagac |
172 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||| |||||||||||||| ||||||| |
|
|
| T |
76660 |
gaattttgaatcgtgacaaagttggtatcagagcatggtagtaggtcctaataggtgcagac |
76721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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