View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_1D_low_63 (Length: 206)
Name: NF5039_1D_low_63
Description: NF5039_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_1D_low_63 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 29 - 206
Target Start/End: Complemental strand, 23333995 - 23333818
Alignment:
| Q |
29 |
ggctggtgtgtaagattggaggtgggtggggtgctctttgcaaggcacggaggctgtaaccaaaacagccattgaagttgggtgtgactcatgaagcgga |
128 |
Q |
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| T |
23333995 |
ggctggtgtgtaagattggaggtgggtggggtgctctttgcaaggcacggaggctgcaaccaaaacagccattgaagttgggtgtgactcatgaagcgga |
23333896 |
T |
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| Q |
129 |
caataaggttgtctatctgaagcatgttccttttccatcaatgcagacggacataacgaagttgaccgataaaattgt |
206 |
Q |
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| T |
23333895 |
caataaggttgtctatctgaagcatcttcgttttccatcaatgcagacggacataacgaagttgaccgataaaattgt |
23333818 |
T |
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