View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_1D_low_66 (Length: 204)
Name: NF5039_1D_low_66
Description: NF5039_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_1D_low_66 |
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Alignment Details
Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 26 - 196
Target Start/End: Complemental strand, 14871225 - 14871056
Alignment:
| Q |
26 |
aaatttataataaggtgttaccgcattgttgttcacgttgcgtttgatgtccatatcaatgttcatacgattaaaaccataccgattacgttgacctcat |
125 |
Q |
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| T |
14871225 |
aaattgataataaggcgtcaccgcatcgttgttcacgtcgcgtctgatgtccatattgatgttcatgcgattaaaatcatatcgattacgttgacttcat |
14871126 |
T |
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| Q |
126 |
atcgatatacatttattcaaccatttcaacctcaactcacatgttttatacaacagtggtcatgatgtcca |
196 |
Q |
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| T |
14871125 |
attgatatacatttattcaaccatttcaacctcaactcacatgtttcatacaaca-tagtcatgatgtcca |
14871056 |
T |
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Target: chr8 (Bit Score: 97; Significance: 7e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 26 - 194
Target Start/End: Original strand, 18657289 - 18657457
Alignment:
| Q |
26 |
aaatttataataaggtgttaccgcattgttgttcacgttgcgtttgatgtccatatcaatgttcatacgattaaaaccataccgattacgttgacctcat |
125 |
Q |
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| T |
18657289 |
aaattgataataaggcgtcaccgcatcgttgttcgcgtcgcgtctgatgtcgataaagatgttcatgcgattaaaaccacaccgattatgttgacctcat |
18657388 |
T |
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| Q |
126 |
atcgatatacatttattcaaccatttcaacctcaactcacatgttttatacaacagtggtcatgatgtc |
194 |
Q |
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| T |
18657389 |
atcgatatacatttattcaaccatttcaaactcaactcacatgtttcatactacagtagtcatgatgtc |
18657457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 7e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 26 - 182
Target Start/End: Original strand, 19211132 - 19211288
Alignment:
| Q |
26 |
aaatttataataaggtgttaccgcattgttgttcacgttgcgtttgatgtccatatcaatgttcatacgattaaaaccataccgattacgttgacctcat |
125 |
Q |
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||||| ||||||||| || ||||||| ||||||| || |||| ||||||||||||| |||||||| |||||||||||| || ||||||||||| ||||| |
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| T |
19211132 |
aaattgataataaggcgtcaccgcatcgttgttcgcgccgcgtatgatgtccatatcgatgttcattcgattaaaaccacactgattacgttgatctcat |
19211231 |
T |
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| Q |
126 |
atcgatatacatttattcaaccatttcaacctcaactcacatgttttatacaacagt |
182 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
19211232 |
atcgatatacatttattcaaccatttcaaactcaactcacatgtttcatacaacagt |
19211288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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