View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_1D_low_67 (Length: 202)
Name: NF5039_1D_low_67
Description: NF5039_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_1D_low_67 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 47301531 - 47301647
Alignment:
| Q |
1 |
gtgctggtggtaacatagttcataacatcgctatgcgtgctggctctgaagctttacctaatggtgttaaactattaggagctattttacaacagcttta |
100 |
Q |
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| T |
47301531 |
gtgctggtggtaacatagttcataacatcgctatgcgtgctggctctgaagctttacctaatggtgttaaactattaggagctattttacaacagcctta |
47301630 |
T |
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| Q |
101 |
tttctatagttcatacc |
117 |
Q |
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| T |
47301631 |
tttctatagttcatacc |
47301647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 47304429 - 47304545
Alignment:
| Q |
1 |
gtgctggtggtaacatagttcataacatcgctatgcgtgctggctctgaagctttacctaatggtgttaaactattaggagctattttacaacagcttta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||| | || |
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| T |
47304429 |
gtgctggtggtaacatagttcataacatcgctatgcgtgctggctctgaagctttacccaatgatgttaaattattaggagctattttacaacacccttt |
47304528 |
T |
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| Q |
101 |
tttctatagttcatacc |
117 |
Q |
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| T |
47304529 |
attctatagttcatacc |
47304545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 4 - 117
Target Start/End: Original strand, 17841671 - 17841784
Alignment:
| Q |
4 |
ctggtggtaacatagttcataacatcgctatgcgtgctggctctgaagctttacctaatggtgttaaactattaggagctattttacaacagctttattt |
103 |
Q |
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| T |
17841671 |
ctggtggtaacatagttcataacatcgctatgcgtgctggctctgaagctttacctaatgatgttaaattagtaggagctattttacaacagcctttgtt |
17841770 |
T |
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| Q |
104 |
ctatagttcatacc |
117 |
Q |
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| T |
17841771 |
ctttagttcatacc |
17841784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 6e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 113 - 202
Target Start/End: Complemental strand, 2546261 - 2546172
Alignment:
| Q |
113 |
atacctggcaactacatgtttaagcactgggcatattgtattctttttgacataagaatgggaatttggttctcaactttacttttgggt |
202 |
Q |
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| T |
2546261 |
atacctggcaactacatgtttaagcacttggcatattgtattctttttgacataagaaagggaatttggttctcaactttacttttgggt |
2546172 |
T |
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