View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_1D_low_68 (Length: 201)
Name: NF5039_1D_low_68
Description: NF5039_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_1D_low_68 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 16438403 - 16438216
Alignment:
| Q |
13 |
ttggtgttgttgggttgggagtttgaattttaatggtgattttgagcgtggtggtgaattttggttgaagtgatgatgacgagtttgcgggttgattcca |
112 |
Q |
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| T |
16438403 |
ttggtgttgttgggttagaagtttgaattttaatggtgattttgagcgtggtggtgaattttggttgaagtgatgatgaggagtttgtgggttggttcca |
16438304 |
T |
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| Q |
113 |
tttttgggggtttgttttgtttctctttctttatctgctctttgtcaccttcgatttggatcaatctccactgtcgctgccatttttgt |
201 |
Q |
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| T |
16438303 |
tttttgagggtttgttttgtttttctttctttgtctac-ctttgttaccttcgatttggatccatctccaaagtcgctgccatttttgt |
16438216 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 39041807 - 39041731
Alignment:
| Q |
13 |
ttggtgttgttgggttgggagtttgaattttaatggtgattttgagcgtggtggtgaattttggttgaagtgatgat |
89 |
Q |
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| T |
39041807 |
ttggtgatgttggactgggagttggaatgttaattgtgatcttgtgtgtggtggtgaattttggttgtggtgatgat |
39041731 |
T |
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