View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5039_1D_low_8 (Length: 497)
Name: NF5039_1D_low_8
Description: NF5039_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_1D_low_8 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| |
|
| [»] chr4 (6 HSPs) |
| |
|
| [»] chr1 (2 HSPs) |
| |
|
| [»] scaffold0079 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 12 - 497
Target Start/End: Complemental strand, 183548 - 183063
Alignment:
| Q |
12 |
gatggacatcaggtgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaa |
111 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
183548 |
gatggacaacaggtgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaa |
183449 |
T |
|
| Q |
112 |
ggtgccccctgttttttcagggtaagaaggggtagagaaaatgcctccagtcaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccatac |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
183448 |
ggtgccccctgttttttcagggtaagaaggggtagagaaaatgcctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccatac |
183349 |
T |
|
| Q |
212 |
tcccaagaaaagctcgaacgaccttaaacaaaagggtacctgtacccgaaaccgacacaggtgggtaggtagagaatacctaggggcgcgagacaactct |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
183348 |
tcccaagaaaagctcgaacgaccttaaacaaaagggtacctgtacccgaaaccgacacaggtgggtaggtagagaatacctaggggcgcgagacaactct |
183249 |
T |
|
| Q |
312 |
ctctaaggaactcggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtgaccaggcccgggcgactgtttaccaaa |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
183248 |
ctctaaggaactcggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtgaccaggcccgggcgactgtttaccaaa |
183149 |
T |
|
| Q |
412 |
aacacaggtctccgcaaagtcgtaagaccatgtatgggggctgacgcctgcccagtgccggaaggttaaggaagttggtgacctga |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
183148 |
aacacaggtctccgcaaagtcgtaagaccatgtatgggggctgacgcctgcccagtgccggaaggttaaggaagttggtgacctga |
183063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 478; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 12 - 497
Target Start/End: Original strand, 493968 - 494453
Alignment:
| Q |
12 |
gatggacatcaggtgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaa |
111 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
493968 |
gatggacaacaggtgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaa |
494067 |
T |
|
| Q |
112 |
ggtgccccctgttttttcagggtaagaaggggtagagaaaatgcctccagtcaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccatac |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
494068 |
ggtgccccctgttttttcagggtaagaaggggtagagaaaatgcctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccatac |
494167 |
T |
|
| Q |
212 |
tcccaagaaaagctcgaacgaccttaaacaaaagggtacctgtacccgaaaccgacacaggtgggtaggtagagaatacctaggggcgcgagacaactct |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
494168 |
tcccaagaaaagctcgaacgaccttaaacaaaagggtacctgtacccgaaaccgacacaggtgggtaggtagagaatacctaggggcgcgagacaactct |
494267 |
T |
|
| Q |
312 |
ctctaaggaactcggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtgaccaggcccgggcgactgtttaccaaa |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
494268 |
ctctaaggaactcggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtgaccaggcccgggcgactgtttaccaaa |
494367 |
T |
|
| Q |
412 |
aacacaggtctccgcaaagtcgtaagaccatgtatgggggctgacgcctgcccagtgccggaaggttaaggaagttggtgacctga |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
494368 |
aacacaggtctccgcaaagtcgtaagaccatgtatgggggctgacgcctgcccagtgccggaaggttaaggaagttggtgacctga |
494453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 12 - 497
Target Start/End: Original strand, 18191629 - 18192115
Alignment:
| Q |
12 |
gatggacatcaggtgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaa |
111 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18191629 |
gatggacaacaggtgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaa |
18191728 |
T |
|
| Q |
112 |
ggtgccccctgttttttcagggtaagaagggg-tagagaaaatgcctccagtcaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccata |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18191729 |
ggtgccccctgttttttcagggtaagaagggggtagagaaaatgcctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccata |
18191828 |
T |
|
| Q |
211 |
ctcccaagaaaagctcgaacgaccttaaacaaaagggtacctgtacccgaaaccgacacaggtgggtaggtagagaatacctaggggcgcgagacaactc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
18191829 |
ctcccaagaaaagctcgaacgaccttaaacaaaagggtacctgtacccgaaaccgacacaggtgggtaggtacagaatacctaggggcgcgagacaactc |
18191928 |
T |
|
| Q |
311 |
tctctaaggaactcggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtgaccaggcccgggcgactgtttaccaa |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18191929 |
tctctaaggaactcggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtgaccaggcccgggcgactgtttaccaa |
18192028 |
T |
|
| Q |
411 |
aaacacaggtctccgcaaagtcgtaagaccatgtatgggggctgacgcctgcccagtgccggaaggttaaggaagttggtgacctga |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18192029 |
aaacacaggtctccgcaaagtcgtaagaccatgtatgggggctgacgcctgcccagtgccggaaggttaaggaagttggtgacctga |
18192115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 311 - 497
Target Start/End: Complemental strand, 16337426 - 16337240
Alignment:
| Q |
311 |
tctctaaggaactcggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtgaccaggcccgggcgactgtttaccaa |
410 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||| |
|
|
| T |
16337426 |
tctctaaggaactcggcaaactagccatgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtgaccaggcttaagtgactgtttatcaa |
16337327 |
T |
|
| Q |
411 |
aaacacaggtctccgcaaagtcgtaagaccatgtatgggggctgacgcctgcccagtgccggaaggttaaggaagttggtgacctga |
497 |
Q |
| |
|
||| ||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
16337326 |
aaatacaggtctctgcaaagtagtaagaccatgtatgggggttgacgcctgcccagtgcaggaaggttaaggaagttggtgacctga |
16337240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 361 - 493
Target Start/End: Original strand, 50525850 - 50525982
Alignment:
| Q |
361 |
ctcctcacaaagggggtcgcagtgaccaggcccgggcgactgtttaccaaaaacacaggtctccgcaaagtcgtaagaccatgtatgggggctgacgcct |
460 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| || |
|
|
| T |
50525850 |
ctcctcataaaaggggtcgcagtgaccaggcccgggcgactgtttatcaaaaacacaggtcttcgcaaagtcgtaagaccatgtatgggggctgacgtct |
50525949 |
T |
|
| Q |
461 |
gcccagtgccggaaggttaaggaagttggtgac |
493 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| |
|
|
| T |
50525950 |
gtccagtgccggaaggttaaggaagttggtgac |
50525982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 457 - 497
Target Start/End: Original strand, 29443302 - 29443342
Alignment:
| Q |
457 |
gcctgcccagtgccggaaggttaaggaagttggtgacctga |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29443302 |
gcctgcccagtgccggaaggttaaggaagttggtgacctga |
29443342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 360
Target Start/End: Original strand, 42247850 - 42247894
Alignment:
| Q |
316 |
aaggaactcggcaaaatagccccgtaacttcgggagaaggggtgc |
360 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
42247850 |
aaggaactcggcaaaatgaccccgtaacttcgggagaaggggtgc |
42247894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 451; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 12 - 494
Target Start/End: Original strand, 34658967 - 34659449
Alignment:
| Q |
12 |
gatggacatcaggtgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaa |
111 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34658967 |
gatggacaacaggtgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaa |
34659066 |
T |
|
| Q |
112 |
ggtgccccctgttttttcagggtaagaaggggtagagaaaatgcctccagtcaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccatac |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34659067 |
ggtgccccctgttttttcagggtaagaaggggtagagaaaatgcctccagccaagattcgagtacgaggcgctccggcgctgaagtaattgatgccatac |
34659166 |
T |
|
| Q |
212 |
tcccaagaaaagctcgaacgaccttaaacaaaagggtacctgtacccgaaaccgacacaggtgggtaggtagagaatacctaggggcgcgagacaactct |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34659167 |
tcccaagaaaagctcgaacgaccttaaacaaaatggtacctgtacccgaaaccgacacaggtgggtaggtagagaatacctaggggcgcgagacaactct |
34659266 |
T |
|
| Q |
312 |
ctctaaggaactcggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtgaccaggcccgggcgactgtttaccaaa |
411 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
34659267 |
ctctaaggaacttggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtgaccaggccctggcgactgtttaccaaa |
34659366 |
T |
|
| Q |
412 |
aacacaggtctccgcaaagtcgtaagaccatgtatgggggctgacgcctgcccagtgccggaaggttaaggaagttggtgacc |
494 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
34659367 |
agcacaggtctccgcaaagtcgtaagaccatgtatgggggctgacgcctgcctagtgccggaaggttaaggaagttggtgacc |
34659449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 154
Target Start/End: Original strand, 8174936 - 8174997
Alignment:
| Q |
92 |
ttatcggttcaagaacacaaggtgccccctgttttttcagggtaagaaggggtagagaaaatg |
154 |
Q |
| |
|
||||||||||||| |||||||||| ||| ||||||| ||||||||||||| ||||||||||| |
|
|
| T |
8174936 |
ttatcggttcaagcacacaaggtg-cccttgtttttgtagggtaagaagggatagagaaaatg |
8174997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 439; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 47 - 497
Target Start/End: Original strand, 14404532 - 14404982
Alignment:
| Q |
47 |
tgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaaggtgccccctgttttttcagggtaagaaggggtag |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14404532 |
tgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaaggtgccccctgttttttcagggtaagaaggggtag |
14404631 |
T |
|
| Q |
147 |
agaaaatgcctccagtcaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccatactcccaagaaaagctcgaacgaccttaaacaaaagg |
246 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14404632 |
agaaaatggctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccatactcccaagaaaagctcgaacgaccttaaacaaaagg |
14404731 |
T |
|
| Q |
247 |
gtacctgtacccgaaaccgacacaggtgggtaggtagagaatacctaggggcgcgagacaactctctctaaggaactcggcaaaatagccccgtaacttc |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14404732 |
gtacctgtacccgaaaccgacacaggtgggtaggtagagaatacctaggggcgcgagacaactctctctaaggaactcggcaaaatagccccgtaacttc |
14404831 |
T |
|
| Q |
347 |
gggagaaggggtgcctcctcacaaagggggtcgcagtgaccaggcccgggcgactgtttaccaaaaacacaggtctccgcaaagtcgtaagaccatgtat |
446 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14404832 |
gggagaaggggtgcctcctcacaaagggggtcgcagtgaccaggcccgggcgactgtttaccaaaaacacaggtctccgcaaagtcgtaagaccatgtat |
14404931 |
T |
|
| Q |
447 |
gggggctgacgcctgcccagtgccggaaggttaaggaagttggtgacctga |
497 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14404932 |
gggggctgacgtctgcccagtgccggaaggttaaggaagttggtgacctga |
14404982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 45610235 - 45610202
Alignment:
| Q |
21 |
caggtgaatattcctgtactacctcttgttggtc |
54 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
45610235 |
caggtgaatattcctgtactacctcttgttggtc |
45610202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0079 (Bit Score: 131; Significance: 9e-68; HSPs: 1)
Name: scaffold0079
Description:
Target: scaffold0079; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 311 - 497
Target Start/End: Original strand, 55434 - 55620
Alignment:
| Q |
311 |
tctctaaggaactcggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtgaccaggcccgggcgactgtttaccaa |
410 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||| |
|
|
| T |
55434 |
tctctaaggaactcggcaaactagccatgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtgaccaggcttaagtgactgtttatcaa |
55533 |
T |
|
| Q |
411 |
aaacacaggtctccgcaaagtcgtaagaccatgtatgggggctgacgcctgcccagtgccggaaggttaaggaagttggtgacctga |
497 |
Q |
| |
|
||| ||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
55534 |
aaatacaggtctctgcaaagtagtaagaccatgtatgggggttgacgcctgcccagtgcaggaaggttaaggaagttggtgacctga |
55620 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 270 - 341
Target Start/End: Complemental strand, 7869347 - 7869276
Alignment:
| Q |
270 |
aggtgggtaggtagagaatacctaggggcgcgagacaactctctctaaggaactcggcaaaatagccccgta |
341 |
Q |
| |
|
|||||||||||||||||||||||||| | | |||||||| |||||||||||||||| ||||||| |||||| |
|
|
| T |
7869347 |
aggtgggtaggtagagaatacctaggagtgtgagacaaccctctctaaggaactcgataaaatagacccgta |
7869276 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 421
Target Start/End: Complemental strand, 7869275 - 7869234
Alignment:
| Q |
379 |
gcagtgaccaggcccgggcgactgtttaccaaaaacacaggtc |
421 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
7869275 |
gcagtgaccaggtccgggcgactgtttacc-aaaacacaggtc |
7869234 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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