View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5039_1D_low_9 (Length: 494)

Name: NF5039_1D_low_9
Description: NF5039_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5039_1D_low_9
NF5039_1D_low_9
[»] chr7 (2 HSPs)
chr7 (107-297)||(223975-224168)
chr7 (1-48)||(224199-224245)
[»] chr6 (6 HSPs)
chr6 (107-297)||(24607885-24608073)
chr6 (147-272)||(27576437-27576563)
chr6 (1-48)||(24607811-24607858)
chr6 (201-272)||(27534183-27534256)
chr6 (20-53)||(27576353-27576386)
chr6 (1-53)||(30123657-30123709)
[»] chr3 (5 HSPs)
chr3 (85-297)||(25373083-25373295)
chr3 (161-272)||(11468193-11468306)
chr3 (217-272)||(53489418-53489473)
chr3 (1-53)||(2614527-2614579)
chr3 (1-53)||(6935609-6935661)
[»] chr5 (5 HSPs)
chr5 (85-205)||(31067553-31067673)
chr5 (4-48)||(31067504-31067548)
chr5 (1-53)||(4931283-4931335)
chr5 (236-272)||(31067681-31067717)
chr5 (1-53)||(35192773-35192825)
[»] chr2 (4 HSPs)
chr2 (72-296)||(29732874-29733090)
chr2 (243-297)||(38563005-38563059)
chr2 (1-50)||(29732835-29732884)
chr2 (221-296)||(17394781-17394857)
[»] scaffold0090 (1 HSPs)
scaffold0090 (217-297)||(50922-51002)


Alignment Details
Target: chr7 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 107 - 297
Target Start/End: Complemental strand, 224168 - 223975
Alignment:
Q  107 aaccttctgcgttgttattttctttaatttatactaagacaaaataataaagtttataatgttttttctataaaatgattataatgttcgttattagaac 206  Q
    |||||||| ||||||||||||||||| ||||||||  | ||||| |||||||||||||||||| |||||| | |||||||||||||||||||||||||||    
T  224168 aaccttctacgttgttattttctttagtttatacttgggcaaaaaaataaagtttataatgttatttctagagaatgattataatgttcgttattagaac 224069  T
Q  207 tttgttattttat--gataagtatgagcacaaaactagaagaagtgatctaacaaaaataagaagaaa-taaatttatattgtatttttatttg 297  Q
     ||||||||||||  || ||||||| ||| |||||| ||||||||| |||||||||||||||||||||  ||| |||||||||  |||||||||    
T  224068 attgttattttatacgacaagtatgggcaaaaaacttgaagaagtgctctaacaaaaataagaagaaagaaaagttatattgtggttttatttg 223975  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 224245 - 224199
Alignment:
Q  1 ttgtaactaacacaaaaatgatcaatattgtaatcaataaaattaaca 48  Q
    |||||||||||| |||| | ||||||||||||||||||||||||||||    
T  224245 ttgtaactaacataaaa-taatcaatattgtaatcaataaaattaaca 224199  T

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Target: chr6 (Bit Score: 88; Significance: 4e-42; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 107 - 297
Target Start/End: Original strand, 24607885 - 24608073
Alignment:
Q  107 aaccttctgcgttgttattttctttaatttatactaagacaaaataataaagtttataatgttttttctataaaatgattataatgttcgttattagaac 206  Q
    |||||||| ||||||||||||||||| ||||||||  | ||||| |||||||||||||||||| ||| || | |||||||||||||||||||||||||||    
T  24607885 aaccttctacgttgttattttctttagtttatactttggcaaaaaaataaagtttataatgttatttttagagaatgattataatgttcgttattagaac 24607984  T
Q  207 tttgttattttatgataagtatgagcacaaaactagaagaagtgatctaacaaaaataagaagaaataaatttatattgtatttttatttg 297  Q
     ||||  || || || ||||||| ||| |||||| ||||||||| ||||||||||||||||||||| ||| ||||||| |  |||||||||    
T  24607985 attgt--ttatacgacaagtatgggcaaaaaacttgaagaagtgctctaacaaaaataagaagaaaaaaagttatattttggttttatttg 24608073  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 147 - 272
Target Start/End: Original strand, 27576437 - 27576563
Alignment:
Q  147 aaaataataaagtttataatgttttttctataaaatgattataatgttcgttattagaactttgttattttat--gataagtatgagcacaaaactagaa 244  Q
    |||| |||||||||||||||||||||| || | | |||||||||||||| ||| |||| ||||||||||||||  || |||||||  || |||| |||||    
T  27576437 aaaaaaataaagtttataatgtttttt-tagagattgattataatgttctttactagagctttgttattttatacgaaaagtatggacaaaaaattagaa 27576535  T
Q  245 gaagtgatctaacaaaaataagaagaaa 272  Q
    ||| || |||||||||||||||||||||    
T  27576536 gaaatgctctaacaaaaataagaagaaa 27576563  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 24607811 - 24607858
Alignment:
Q  1 ttgtaactaacacaaaaatgatcaatattgtaatcaataaaattaaca 48  Q
    |||||||||| ||  |||||||||||||||||||||||||||||||||    
T  24607811 ttgtaactaatacggaaatgatcaatattgtaatcaataaaattaaca 24607858  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 272
Target Start/End: Original strand, 27534183 - 27534256
Alignment:
Q  201 tagaactttgttattttat--gataagtatgagcacaaaactagaagaagtgatctaacaaaaataagaagaaa 272  Q
    |||| ||||||||||||||  || |||||||  || |||| ||||||||||| |||||||||||||||||||||    
T  27534183 tagagctttgttattttatacgaaaagtatggacaaaaaattagaagaagtgctctaacaaaaataagaagaaa 27534256  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 27576353 - 27576386
Alignment:
Q  20 gatcaatattgtaatcaataaaattaacatacaa 53  Q
    ||||||||| ||||||||||||||||||||||||    
T  27576353 gatcaatatagtaatcaataaaattaacatacaa 27576386  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 30123657 - 30123709
Alignment:
Q  1 ttgtaactaacacaaaaatgatcaatattgtaatcaataaaattaacatacaa 53  Q
    |||||||||||||| ||| |||||||||| |||||||||| || || ||||||    
T  30123657 ttgtaactaacacagaaaagatcaatattctaatcaataatataaaaatacaa 30123709  T

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Target: chr3 (Bit Score: 88; Significance: 4e-42; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 85 - 297
Target Start/End: Original strand, 25373083 - 25373295
Alignment:
Q  85 atttcaaacgaatatctctgttaaccttctgcgttgttattttctttaatttatactaagacaaaataataaagtttataatgttttttctataaaatga 184  Q
    |||| ||| |||||||| | | |||||||| ||||||||||||||||| |||||||| ||  |||| |||||||||||||||| | |||||| | |||||    
T  25373083 attttaaaggaatatctttatcaaccttctacgttgttattttctttagtttatacttaggaaaaa-aataaagtttataatgctatttctagagaatga 25373181  T
Q  185 ttataatgttcgttattagaactttgttattttat--gataagtatgagcacaaaactagaagaagtgatctaacaaaaataagaagaaataaatttata 282  Q
    |||||||||| ||||||||||| ||||||||||||  || ||||||| ||| |||||| ||||||||| ||||| ||||||||||||||| ||| |||||    
T  25373182 ttataatgttagttattagaacattgttattttataagacaagtatgggcaaaaaacttgaagaagtgctctaataaaaataagaagaaa-aaagttata 25373280  T
Q  283 ttgtatttttatttg 297  Q
    ||||  |||||||||    
T  25373281 ttgtggttttatttg 25373295  T

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Target: chr3; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 161 - 272
Target Start/End: Complemental strand, 11468306 - 11468193
Alignment:
Q  161 tataatgttttttctataaaatgattataatgttcgttattagaactttgttattt--tatgataagtatgagcacaaaactagaagaagtgatctaaca 258  Q
    ||||||||| |||||| | ||||||||||||||||||||||||||| |||||||||  || |||||||||  ||| |||||| ||||||||| |||||||    
T  11468306 tataatgttatttctagagaatgattataatgttcgttattagaacattgttatttgatacgataagtattggcaaaaaacttgaagaagtgctctaaca 11468207  T
Q  259 aaaataagaagaaa 272  Q
    ||||||||||||||    
T  11468206 aaaataagaagaaa 11468193  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 272
Target Start/End: Original strand, 53489418 - 53489473
Alignment:
Q  217 tatgataagtatgagcacaaaactagaagaagtgatctaacaaaaataagaagaaa 272  Q
    |||||||||||||||   |||| || |||||||| |||||||||||||||||||||    
T  53489418 tatgataagtatgaggcaaaaattataagaagtgctctaacaaaaataagaagaaa 53489473  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 2614579 - 2614527
Alignment:
Q  1 ttgtaactaacacaaaaatgatcaatattgtaatcaataaaattaacatacaa 53  Q
    ||||||||| ||||||||  ||||||||| ||||||||||||| || ||||||    
T  2614579 ttgtaactatcacaaaaaatatcaatattttaatcaataaaataaaaatacaa 2614527  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 6935609 - 6935661
Alignment:
Q  1 ttgtaactaacacaaaaatgatcaatattgtaatcaataaaattaacatacaa 53  Q
    |||||||||||||| ||| |||||||||| |||||||||| || || ||||||    
T  6935609 ttgtaactaacacataaaagatcaatattctaatcaataacataaaaatacaa 6935661  T

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Target: chr5 (Bit Score: 61; Significance: 6e-26; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 85 - 205
Target Start/End: Original strand, 31067553 - 31067673
Alignment:
Q  85 atttcaaacgaatatctctgttaaccttctgcgttgttattttctttaatttatactaagacaaaataataaagtttataatgttttttctataaaatga 184  Q
    |||||||| |||||||| | | ||| ||||  |||||||||||||||| |||||||| || ||||| |||||||||||||||||| ||| || | |||||    
T  31067553 atttcaaaggaatatctttatcaactttctaagttgttattttctttagtttatacttaggcaaaaaaataaagtttataatgttatttttagagaatga 31067652  T
Q  185 ttataatgttcgttattagaa 205  Q
    |||||||||||||||||||||    
T  31067653 ttataatgttcgttattagaa 31067673  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 31067504 - 31067548
Alignment:
Q  4 taactaacacaaaaatgatcaatattgtaatcaataaaattaaca 48  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||    
T  31067504 taactaacacagaaatgatcaatattgtaatcaatacaattaaca 31067548  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 4931283 - 4931335
Alignment:
Q  1 ttgtaactaacacaaaaatgatcaatattgtaatcaataaaattaacatacaa 53  Q
    |||||| ||||||| ||| |||||||||| ||||||||||||| || ||||||    
T  4931283 ttgtaattaacacataaaagatcaatattctaatcaataaaataaaaatacaa 4931335  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 272
Target Start/End: Original strand, 31067681 - 31067717
Alignment:
Q  236 aaactagaagaagtgatctaacaaaaataagaagaaa 272  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  31067681 aaacttgaagaagtgctctaacaaaaataagaagaaa 31067717  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 35192825 - 35192773
Alignment:
Q  1 ttgtaactaacacaaaaatgatcaatattgtaatcaataaaattaacatacaa 53  Q
    ||||||||||||||||||  ||||||||| |||||||||| || || ||||||    
T  35192825 ttgtaactaacacaaaaaatatcaatattctaatcaataatataaaaatacaa 35192773  T

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Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 72 - 296
Target Start/End: Original strand, 29732874 - 29733090
Alignment:
Q  72 aaattaacatacaatttcaaacgaatatctctgttaaccttctgcgttgttattttctttaatttatactaagacaaaataataaagtttataatgtttt 171  Q
    |||||||||||  |||| || ||||||||| | | ||| |||| ||||||||||||||||| |||||||  ||  |||| |||||||||||||           
T  29732874 aaattaacata--attttaatcgaatatctttatcaactttctacgttgttattttctttagtttatacggaggaaaaaaaataaagtttata------- 29732964  T
Q  172 ttctataaaatgattataatgttcgttattagaactttgttattt--tatgataagtatgagcacaaaactagaagaagtgatctaacaaaaataagaag 269  Q
    | ||| | |||||||||||||||| |||||| |||||||||||||  ||  ||||||||| ||| ||||||||||| |||| ||||||||||| | |||     
T  29732965 tcctagagaatgattataatgttcattattaaaactttgttatttgatacaataagtatgggcaaaaaactagaagcagtgctctaacaaaaagaggaa- 29733063  T
Q  270 aaataaatttatattgtatttttattt 296  Q
    ||| ||| ||||||||| |||||||||    
T  29733064 aaacaaagttatattgtgtttttattt 29733090  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 243 - 297
Target Start/End: Complemental strand, 38563059 - 38563005
Alignment:
Q  243 aagaagtgatctaacaaaaataagaagaaataaatttatattgtatttttatttg 297  Q
    ||||| || ||||||||||||||| ||| ||||| ||||||||||||||||||||    
T  38563059 aagaaatgctctaacaaaaataaggagatataaagttatattgtatttttatttg 38563005  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 29732835 - 29732884
Alignment:
Q  1 ttgtaactaacacaaaaatgatcaatattgtaatcaataaaattaacata 50  Q
    |||||||||||||  | | |||||||||||||||||||||||||||||||    
T  29732835 ttgtaactaacacggagaggatcaatattgtaatcaataaaattaacata 29732884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 221 - 296
Target Start/End: Complemental strand, 17394857 - 17394781
Alignment:
Q  221 ataagtatgagcacaaaactagaagaagtgatctaacaaaaataagaag-aaataaatttatattgtatttttattt 296  Q
    |||||||||||   |||| || |||||||| ||||||||||| |||||| ||| ||| |||| ||||||||||||||    
T  17394857 ataagtatgagttgaaaattacaagaagtgctctaacaaaaagaagaagaaaaaaaaattatgttgtatttttattt 17394781  T

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Target: scaffold0090 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 217 - 297
Target Start/End: Original strand, 50922 - 51002
Alignment:
Q  217 tatgataagtatgagcacaaaactagaagaagtgatctaacaaaaataagaagaaataaatttatattgtatttttatttg 297  Q
    ||||||||||||||||  |||| || |||||||| ||||| ||||||||||||||| ||  ||||||| | ||||||||||    
T  50922 tatgataagtatgagccaaaaattataagaagtgttctaaaaaaaataagaagaaaaaatattatattttgtttttatttg 51002  T

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