View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_2D_high_5 (Length: 203)
Name: NF5039_2D_high_5
Description: NF5039_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_2D_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 5e-95; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 10821031 - 10821214
Alignment:
| Q |
1 |
tcgaggtgatccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcggatctaaagcctgttgttgacaagtacaaaaccttc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
10821031 |
tcgaggtgatccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcagatctaaagcctgttgttgacaagtacaaaaccttc |
10821130 |
T |
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| Q |
101 |
ttaggaagaccttggcaacaatatgcaagagttatggtgatgaaaacttttatggacactttagtcagccccctaggttggtct |
184 |
Q |
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| T |
10821131 |
ttaggaagaccttggcaacaatattcaagagttatggtgatgaaaacttttatggacactttagtcagccccctaggttggtct |
10821214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 1629667 - 1629484
Alignment:
| Q |
1 |
tcgaggtgatccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcggatctaaagcctgttgttgacaagtacaaaaccttc |
100 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
1629667 |
tcgaggtgacccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcagatctaaaacctgttgttgacaagtacaaaaccttc |
1629568 |
T |
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| Q |
101 |
ttaggaagaccttggcaacaatatgcaagagttatggtgatgaaaacttttatggacactttagtcagccccctaggttggtct |
184 |
Q |
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| T |
1629567 |
ttgggcagaccttggcaacaatattcaagagtaatggtgatgaaaacttttatggacactttagtgagccccctaggttggtct |
1629484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 1606369 - 1606186
Alignment:
| Q |
1 |
tcgaggtgatccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcggatctaaagcctgttgttgacaagtacaaaaccttc |
100 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1606369 |
tcgaggtgacccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcagatctaaagcctgttgttgacaagtacaaaaccttc |
1606270 |
T |
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| Q |
101 |
ttaggaagaccttggcaacaatatgcaagagttatggtgatgaaaacttttatggacactttagtcagccccctaggttggtct |
184 |
Q |
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|| || || ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||| |
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| T |
1606269 |
ttgggcaggccttggcaacaatattcaagagttatggtgatgaaaactttcatggacactttagtaagccccctgggttggtct |
1606186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 5 - 184
Target Start/End: Complemental strand, 1623487 - 1623308
Alignment:
| Q |
5 |
ggtgatccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcggatctaaagcctgttgttgacaagtacaaaaccttcttag |
104 |
Q |
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| T |
1623487 |
ggtgacccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcagatctaaagcctgttgttgacaagtacaaaaccttcttgg |
1623388 |
T |
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| Q |
105 |
gaagaccttggcaacaatatgcaagagttatggtgatgaaaacttttatggacactttagtcagccccctaggttggtct |
184 |
Q |
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|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1623387 |
gaaggccttggcaacaattctcaagagttatggtgatgaaaacttttatggacactttagtgagccccctaggttggtct |
1623308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 18781185 - 18781002
Alignment:
| Q |
1 |
tcgaggtgatccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcggatctaaagcctgttgttgacaagtacaaaaccttc |
100 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
18781185 |
tcgaggtgacccattccaaaacactggaatttcattccacaattgtcaaattatggctgcatcagatctaaagcctgttgttgacaagtacaaaaccttc |
18781086 |
T |
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| Q |
101 |
ttaggaagaccttggcaacaatatgcaagagttatggtgatgaaaacttttatggacactttagtcagccccctaggttggtct |
184 |
Q |
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|| || || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
18781085 |
ttgggcaggccttggcaacaatattcaagagttatggtgatgaaaacttttatggacactttagtgagccccctaggttggtct |
18781002 |
T |
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