View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5039_2D_low_3 (Length: 286)

Name: NF5039_2D_low_3
Description: NF5039_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5039_2D_low_3
NF5039_2D_low_3
[»] chr6 (5 HSPs)
chr6 (25-272)||(10522816-10523058)
chr6 (155-208)||(30600550-30600603)
chr6 (166-228)||(34057936-34057998)
chr6 (166-203)||(10335391-10335428)
chr6 (155-199)||(9024180-9024224)
[»] chr7 (9 HSPs)
chr7 (132-210)||(39582866-39582944)
chr7 (166-201)||(10893884-10893919)
chr7 (218-249)||(41153700-41153731)
chr7 (173-203)||(650526-650556)
chr7 (166-204)||(12843049-12843087)
chr7 (166-204)||(18750882-18750920)
chr7 (166-207)||(21238820-21238861)
chr7 (166-203)||(43160491-43160528)
chr7 (155-203)||(37775989-37776037)
[»] chr8 (8 HSPs)
chr8 (155-210)||(32691743-32691798)
chr8 (166-202)||(24758535-24758571)
chr8 (159-203)||(3112362-3112406)
chr8 (166-210)||(8917551-8917595)
chr8 (161-199)||(16230100-16230138)
chr8 (173-202)||(31681852-31681881)
chr8 (159-199)||(9936825-9936865)
chr8 (159-199)||(26096734-26096774)
[»] chr3 (6 HSPs)
chr3 (139-209)||(42607629-42607699)
chr3 (147-210)||(1502574-1502637)
chr3 (166-210)||(19323463-19323507)
chr3 (168-210)||(32166200-32166242)
chr3 (166-199)||(30367634-30367667)
chr3 (147-199)||(23271990-23272042)
[»] chr4 (11 HSPs)
chr4 (104-181)||(540776-540853)
chr4 (155-204)||(2976700-2976749)
chr4 (166-209)||(10164464-10164507)
chr4 (173-204)||(10518003-10518034)
chr4 (157-204)||(45615421-45615468)
chr4 (166-208)||(8457927-8457969)
chr4 (155-217)||(18513245-18513307)
chr4 (153-202)||(25400849-25400898)
chr4 (166-195)||(41578413-41578442)
chr4 (168-204)||(41989570-41989606)
chr4 (166-202)||(50216697-50216733)
[»] chr2 (4 HSPs)
chr2 (153-211)||(30289809-30289868)
chr2 (166-207)||(32843716-32843757)
chr2 (155-199)||(16630806-16630850)
chr2 (155-199)||(18570983-18571027)
[»] chr1 (7 HSPs)
chr1 (155-210)||(13709186-13709241)
chr1 (153-210)||(12611966-12612023)
chr1 (165-202)||(41500720-41500757)
chr1 (165-202)||(41510898-41510935)
chr1 (155-199)||(3921678-3921722)
chr1 (173-209)||(13709113-13709149)
chr1 (166-210)||(26462660-26462704)
[»] chr5 (3 HSPs)
chr5 (166-200)||(645342-645376)
chr5 (168-206)||(41755327-41755365)
chr5 (155-199)||(23287353-23287397)


Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 25 - 272
Target Start/End: Original strand, 10522816 - 10523058
Alignment:
Q  25 cacagatacagatgcttgacgctggtaatagcttttaaaa-aatgacataatttgatgtaaatagctccatatggcatggacacttatgattgaaggtgt 123  Q
    |||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  10522816 cacagatacagatgcttgtcgctggtaataacttttaaaaaaatgacataatttgatgtaattacctccatatggcatggacacttatgattgaaggtgt 10522915  T
Q  124 gtccggtgtctgtcacgtgtccatgtccaatactgacacacatgattatattcaattatgtcattttcttaaattactaccagtgtctttgtccgtgtct 223  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  10522916 gtccggtgtctgtcacgtgtccatgtccaatacagacacacatgattatattcaattatgtcattttcttaaattactaccagtgtctttgtcc------ 10523009  T
Q  224 gtgtctgtgttggtgcttcataggtaaattatttgtgtaatgtcgttgt 272  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  10523010 gtgtttgtgttggtgcttcataggtaaattatttgtgtaatgtcgttgt 10523058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 208
Target Start/End: Complemental strand, 30600603 - 30600550
Alignment:
Q  155 actgacacacatgattatattcaattatgtcattttcttaaattactaccagtg 208  Q
    ||||||||| |||||||  ||| |||||||||||||||||||||||||| ||||    
T  30600603 actgacacatatgattacgttctattatgtcattttcttaaattactactagtg 30600550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 228
Target Start/End: Complemental strand, 34057998 - 34057936
Alignment:
Q  166 tgattatattcaattatgtcattttcttaaattactaccagtgtctttgtccgtgtctgtgtc 228  Q
    |||||| | |||||||||||||||||||| |||||||  ||||| | ||||||||| ||||||    
T  34057998 tgattacagtcaattatgtcattttcttatattactattagtgtttgtgtccgtgtatgtgtc 34057936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 203
Target Start/End: Original strand, 10335391 - 10335428
Alignment:
Q  166 tgattatattcaattatgtcattttcttaaattactac 203  Q
    |||||| |||||||||||||||||||| ||||||||||    
T  10335391 tgattacattcaattatgtcattttctcaaattactac 10335428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 9024180 - 9024224
Alignment:
Q  155 actgacacacatgattatattcaattatgtcattttcttaaatta 199  Q
    ||||||||| ||||||| ||| |||||||||||||||| ||||||    
T  9024180 actgacacatatgattacattgaattatgtcattttctcaaatta 9024224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 132 - 210
Target Start/End: Original strand, 39582866 - 39582944
Alignment:
Q  132 tctgtcacgtgtccatgtccaatactgacacacatgattatattcaattatgtcattttcttaaattactaccagtgtc 210  Q
    |||| ||||||||||||||||| || ||||||||||| |||||||||| ||||||||||||||||| ||||||||||||    
T  39582866 tctgacacgtgtccatgtccaacaccgacacacatgactatattcaataatgtcattttcttaaatcactaccagtgtc 39582944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 201
Target Start/End: Original strand, 10893884 - 10893919
Alignment:
Q  166 tgattatattcaattatgtcattttcttaaattact 201  Q
    |||||| |||||||||||||||||||||||||||||    
T  10893884 tgattacattcaattatgtcattttcttaaattact 10893919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 218 - 249
Target Start/End: Original strand, 41153700 - 41153731
Alignment:
Q  218 gtgtctgtgtctgtgttggtgcttcataggta 249  Q
    ||||||||||||||||||||||||||||||||    
T  41153700 gtgtctgtgtctgtgttggtgcttcataggta 41153731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 203
Target Start/End: Complemental strand, 650556 - 650526
Alignment:
Q  173 attcaattatgtcattttcttaaattactac 203  Q
    |||||||||||||||||||||||||||||||    
T  650556 attcaattatgtcattttcttaaattactac 650526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 12843049 - 12843087
Alignment:
Q  166 tgattatattcaattatgtcattttcttaaattactacc 204  Q
    ||||||||||||||||||||||||||| |||||| ||||    
T  12843049 tgattatattcaattatgtcattttctcaaattaatacc 12843087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 18750920 - 18750882
Alignment:
Q  166 tgattatattcaattatgtcattttcttaaattactacc 204  Q
    |||||| ||||||||||||||||||||||||||| ||||    
T  18750920 tgattacattcaattatgtcattttcttaaattattacc 18750882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 21238861 - 21238820
Alignment:
Q  166 tgattatattcaattatgtcattttcttaaattactaccagt 207  Q
    |||||| |||||||| || |||||||||||||||||||||||    
T  21238861 tgattacattcaattttgacattttcttaaattactaccagt 21238820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 203
Target Start/End: Complemental strand, 43160528 - 43160491
Alignment:
Q  166 tgattatattcaattatgtcattttcttaaattactac 203  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  43160528 tgattacattcaattatgttattttcttaaattactac 43160491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 37776037 - 37775989
Alignment:
Q  155 actgacacacatgattatattcaattatgtcattttcttaaattactac 203  Q
    |||||||||  |||||| ||| |||||||||||||||| ||||||||||    
T  37776037 actgacacatgtgattacatttaattatgtcattttctcaaattactac 37775989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 210
Target Start/End: Complemental strand, 32691798 - 32691743
Alignment:
Q  155 actgacacacatgattatattcaattatgtcattttcttaaattactaccagtgtc 210  Q
    |||||||||  |||||| |||||||||||||||||||||||||||||||| |||||    
T  32691798 actgacacatgtgattacattcaattatgtcattttcttaaattactaccggtgtc 32691743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 166 - 202
Target Start/End: Original strand, 24758535 - 24758571
Alignment:
Q  166 tgattatattcaattatgtcattttcttaaattacta 202  Q
    |||||||||||||||||||||||||||||||||||||    
T  24758535 tgattatattcaattatgtcattttcttaaattacta 24758571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 3112362 - 3112406
Alignment:
Q  159 acacacatgattatattcaattatgtcattttcttaaattactac 203  Q
    ||||||||||||| ||||||| |||||||||||| ||||||||||    
T  3112362 acacacatgattaaattcaataatgtcattttctcaaattactac 3112406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 8917551 - 8917595
Alignment:
Q  166 tgattatattcaattatgtcattttcttaaattactaccagtgtc 210  Q
    |||||| ||||||||||||||||||||||||| || |||||||||    
T  8917551 tgattacattcaattatgtcattttcttaaatcacaaccagtgtc 8917595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 16230100 - 16230138
Alignment:
Q  161 acacatgattatattcaattatgtcattttcttaaatta 199  Q
    ||||||||||||||| |||||||||||||||| ||||||    
T  16230100 acacatgattatattaaattatgtcattttctaaaatta 16230138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 202
Target Start/End: Original strand, 31681852 - 31681881
Alignment:
Q  173 attcaattatgtcattttcttaaattacta 202  Q
    ||||||||||||||||||||||||||||||    
T  31681852 attcaattatgtcattttcttaaattacta 31681881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 199
Target Start/End: Complemental strand, 9936865 - 9936825
Alignment:
Q  159 acacacatgattatattcaattatgtcattttcttaaatta 199  Q
    ||||| ||||||||||| |||||| ||||||||||||||||    
T  9936865 acacatatgattatattgaattatatcattttcttaaatta 9936825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 26096734 - 26096774
Alignment:
Q  159 acacacatgattatattcaattatgtcattttcttaaatta 199  Q
    ||||||||||||| |||||||| | ||||||||||||||||    
T  26096734 acacacatgattacattcaattttctcattttcttaaatta 26096774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 209
Target Start/End: Complemental strand, 42607699 - 42607629
Alignment:
Q  139 cgtgtccatgtccaatactgacacacatgattatattcaattatgtcattttcttaaattactaccagtgt 209  Q
    ||||||| |||||||||| ||||||  ||||||||||||||||||||| |||| || |||||||| |||||    
T  42607699 cgtgtccgtgtccaataccgacacatgtgattatattcaattatgtcagtttcatagattactacaagtgt 42607629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 210
Target Start/End: Complemental strand, 1502637 - 1502574
Alignment:
Q  147 tgtccaatactgacacacatgattatattcaattatgtcattttcttaaattactaccagtgtc 210  Q
    ||||||| || ||||||  |||||| |||||||||||||||||||||| |||| ||||||||||    
T  1502637 tgtccaacacagacacatgtgattacattcaattatgtcattttcttagattattaccagtgtc 1502574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 19323463 - 19323507
Alignment:
Q  166 tgattatattcaattatgtcattttcttaaattactaccagtgtc 210  Q
    |||||| |||||||||||||||||||| ||||||||| |||||||    
T  19323463 tgattaaattcaattatgtcattttctcaaattactatcagtgtc 19323507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 210
Target Start/End: Original strand, 32166200 - 32166242
Alignment:
Q  168 attatattcaattatgtcattttcttaaattactaccagtgtc 210  Q
    |||| |||||||||||||||||||| |||||| ||||||||||    
T  32166200 attacattcaattatgtcattttctcaaattattaccagtgtc 32166242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 199
Target Start/End: Original strand, 30367634 - 30367667
Alignment:
Q  166 tgattatattcaattatgtcattttcttaaatta 199  Q
    |||||| |||||||||||||||||||||||||||    
T  30367634 tgattacattcaattatgtcattttcttaaatta 30367667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 23271990 - 23272042
Alignment:
Q  147 tgtccaatactgacacacatgattatattcaattatgtcattttcttaaatta 199  Q
    ||||||| || |||||| ||||||| |||||||||||||| ||||| ||||||    
T  23271990 tgtccaacaccgacacatatgattacattcaattatgtcagtttctcaaatta 23272042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 181
Target Start/End: Original strand, 540776 - 540853
Alignment:
Q  104 acacttatgattgaaggtgtgtccggtgtctgtcacgtgtccatgtccaatactgacacacatgattatattcaatta 181  Q
    |||||| |||| |||||||||||||||||||| || |||||||||||| | |  ||||||  ||||||| ||||||||    
T  540776 acacttgtgatggaaggtgtgtccggtgtctgacatgtgtccatgtccgacatcgacacatgtgattatgttcaatta 540853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 204
Target Start/End: Complemental strand, 2976749 - 2976700
Alignment:
Q  155 actgacacacatgattatattcaattatgtcattttcttaaattactacc 204  Q
    |||||||| |||||||| |||||||||||||||||||| |||||| ||||    
T  2976749 actgacacgcatgattacattcaattatgtcattttctcaaattattacc 2976700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 209
Target Start/End: Complemental strand, 10164507 - 10164464
Alignment:
Q  166 tgattatattcaattatgtcattttcttaaattactaccagtgt 209  Q
    |||||| ||||||||||| |||||||||||||||||||| ||||    
T  10164507 tgattacattcaattatgccattttcttaaattactaccggtgt 10164464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 204
Target Start/End: Original strand, 10518003 - 10518034
Alignment:
Q  173 attcaattatgtcattttcttaaattactacc 204  Q
    ||||||||||||||||||||||||||||||||    
T  10518003 attcaattatgtcattttcttaaattactacc 10518034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 204
Target Start/End: Original strand, 45615421 - 45615468
Alignment:
Q  157 tgacacacatgattatattcaattatgtcattttcttaaattactacc 204  Q
    |||||||  ||||||  |||||||||||||||||||||||||||||||    
T  45615421 tgacacatgtgattacgttcaattatgtcattttcttaaattactacc 45615468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 208
Target Start/End: Complemental strand, 8457969 - 8457927
Alignment:
Q  166 tgattatattcaattatgtcattttcttaaattactaccagtg 208  Q
    |||||| |||||||||||||||||||| |||||| ||||||||    
T  8457969 tgattacattcaattatgtcattttctcaaattattaccagtg 8457927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 217
Target Start/End: Original strand, 18513245 - 18513307
Alignment:
Q  155 actgacacacatgattatattcaattatgtcattttcttaaattactaccagtgtctttgtcc 217  Q
    ||||||||| ||||||| ||| |||||||||||||||| |||||| || | |||||| |||||    
T  18513245 actgacacatatgattacattgaattatgtcattttctcaaattattatcggtgtctgtgtcc 18513307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 25400898 - 25400849
Alignment:
Q  153 atactgacacacatgattatattcaattatgtcattttcttaaattacta 202  Q
    |||||||||||  |||| | ||| ||||||||||||||||||||||||||    
T  25400898 atactgacacatgtgataacatttaattatgtcattttcttaaattacta 25400849  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 195
Target Start/End: Complemental strand, 41578442 - 41578413
Alignment:
Q  166 tgattatattcaattatgtcattttcttaa 195  Q
    ||||||||||||||||||||||||||||||    
T  41578442 tgattatattcaattatgtcattttcttaa 41578413  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 41989606 - 41989570
Alignment:
Q  168 attatattcaattatgtcattttcttaaattactacc 204  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  41989606 attacattcaattatgtcattttcttaaattattacc 41989570  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 202
Target Start/End: Original strand, 50216697 - 50216733
Alignment:
Q  166 tgattatattcaattatgtcattttcttaaattacta 202  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  50216697 tgattacattcaattatgtcattttcttaaatcacta 50216733  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 211
Target Start/End: Complemental strand, 30289868 - 30289809
Alignment:
Q  153 atactgacacacatgattatattcaatta-tgtcattttcttaaattactaccagtgtct 211  Q
    ||||||||||||||| ||| ||||||||| |  ||||||||||||||| |||||||||||    
T  30289868 atactgacacacatggttacattcaattactcacattttcttaaattattaccagtgtct 30289809  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 32843757 - 32843716
Alignment:
Q  166 tgattatattcaattatgtcattttcttaaattactaccagt 207  Q
    |||||| |||||||||||||||||||| | ||||||||||||    
T  32843757 tgattacattcaattatgtcattttctcatattactaccagt 32843716  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 16630850 - 16630806
Alignment:
Q  155 actgacacacatgattatattcaattatgtcattttcttaaatta 199  Q
    |||||||||  |||||| ||| |||||||||||||||||||||||    
T  16630850 actgacacatgtgattaaattgaattatgtcattttcttaaatta 16630806  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 18571027 - 18570983
Alignment:
Q  155 actgacacacatgattatattcaattatgtcattttcttaaatta 199  Q
    ||||||||| ||||||| ||| |||||||||||||||| ||||||    
T  18571027 actgacacatatgattacattgaattatgtcattttctcaaatta 18570983  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 210
Target Start/End: Complemental strand, 13709241 - 13709186
Alignment:
Q  155 actgacacacatgattatattcaattatgtcattttcttaaattactaccagtgtc 210  Q
    |||||||||  |||||| |||||||| |||||||||||||||| |||| |||||||    
T  13709241 actgacacatctgattacattcaattttgtcattttcttaaatcactatcagtgtc 13709186  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 12612023 - 12611966
Alignment:
Q  153 atactgacacacatgattatattcaattatgtcattttcttaaattactaccagtgtc 210  Q
    ||||||||||| ||||||| | |||||||||| ||||| | ||||||||| |||||||    
T  12612023 atactgacacatatgattacactcaattatgtgattttttcaaattactaacagtgtc 12611966  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 202
Target Start/End: Original strand, 41500720 - 41500757
Alignment:
Q  165 atgattatattcaattatgtcattttcttaaattacta 202  Q
    ||||||| |||||||||| |||||||||||||||||||    
T  41500720 atgattacattcaattatatcattttcttaaattacta 41500757  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 202
Target Start/End: Original strand, 41510898 - 41510935
Alignment:
Q  165 atgattatattcaattatgtcattttcttaaattacta 202  Q
    ||||||| |||||||||| |||||||||||||||||||    
T  41510898 atgattacattcaattatatcattttcttaaattacta 41510935  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 3921722 - 3921678
Alignment:
Q  155 actgacacacatgattatattcaattatgtcattttcttaaatta 199  Q
    |||||||| |||||||| ||| |||||||||||||||| ||||||    
T  3921722 actgacacgcatgattacattgaattatgtcattttctcaaatta 3921678  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 209
Target Start/End: Complemental strand, 13709149 - 13709113
Alignment:
Q  173 attcaattatgtcattttcttaaattactaccagtgt 209  Q
    |||||||| | ||||||||||||||||||||||||||    
T  13709149 attcaattttatcattttcttaaattactaccagtgt 13709113  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 26462660 - 26462704
Alignment:
Q  166 tgattatattcaattatgtcattttcttaaattactaccagtgtc 210  Q
    |||||| |||||||||| |||||||||||||||| || |||||||    
T  26462660 tgattacattcaattatttcattttcttaaattattatcagtgtc 26462704  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 200
Target Start/End: Complemental strand, 645376 - 645342
Alignment:
Q  166 tgattatattcaattatgtcattttcttaaattac 200  Q
    |||||| ||||||||||||||||||||||||||||    
T  645376 tgattacattcaattatgtcattttcttaaattac 645342  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 206
Target Start/End: Complemental strand, 41755365 - 41755327
Alignment:
Q  168 attatattcaattatgtcattttcttaaattactaccag 206  Q
    |||| |||||||||||||||||||||| |||||||||||    
T  41755365 attacattcaattatgtcattttcttacattactaccag 41755327  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 23287353 - 23287397
Alignment:
Q  155 actgacacacatgattatattcaattatgtcattttcttaaatta 199  Q
    ||||||||| || |||||||| ||||||||||||||| |||||||    
T  23287353 actgacacatataattatattgaattatgtcattttcctaaatta 23287397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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