View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5039_2D_low_5 (Length: 229)
Name: NF5039_2D_low_5
Description: NF5039_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_2D_low_5 |
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| [»] chr7 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr3 (3 HSPs) |
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| [»] chr6 (3 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr5 (3 HSPs) |
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| [»] scaffold0564 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 15 - 229
Target Start/End: Original strand, 39490053 - 39490267
Alignment:
| Q |
15 |
acatcaatacatgctaaataaactgaactgatttgaaccatattaatggttcagtaccttaaaaccacttcagtcagttctattgacaataatataaact |
114 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
39490053 |
acatcaatacatggtaaataaactgaactgatttgaaccatattaatggttcagtaccttaaaaccacttcagccagttctattgacaataatataaact |
39490152 |
T |
|
| Q |
115 |
ataaaacaattgtaaaaatgatagaactataaaaaccataccttcaaaaccatgtaaccagctacgtgcgcacaagagagcctgaacagaatcatctttc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39490153 |
ataaaacaattgtaaaaatgatagaactataaaaaccataccttcaaaaccatgtaaccagctacgtgcgcacaagagagcctgaacagaatcatctttc |
39490252 |
T |
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| Q |
215 |
attgaacttctatac |
229 |
Q |
| |
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||||||||||||||| |
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|
| T |
39490253 |
attgaacttctatac |
39490267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 7505445 - 7505396
Alignment:
| Q |
117 |
aaaacaattgtaaaaatgatagaactataaaaaccataccttcaaaacca |
166 |
Q |
| |
|
|||| |||| |||||||||||||||| ||||| |||| |||||||||||| |
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|
| T |
7505445 |
aaaaaaattataaaaatgatagaactttaaaagccatgccttcaaaacca |
7505396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 15 - 229
Target Start/End: Complemental strand, 12748984 - 12748770
Alignment:
| Q |
15 |
acatcaatacatgctaaataaactgaactgatttgaaccatattaatggttcagtaccttaaaaccacttcagtcagttctattgacaataatataaact |
114 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
12748984 |
acatcaatacatggtaaataaactgaactgatttgaaccatattaatggttcagtaccttaaaaccacttcagccagttctattgacaataatataaact |
12748885 |
T |
|
| Q |
115 |
ataaaacaattgtaaaaatgatagaactataaaaaccataccttcaaaaccatgtaaccagctacgtgcgcacaagagagcctgaacagaatcatctttc |
214 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12748884 |
ataaaacaattgtaaaaatgatagaactataaaaaccataccttcaaaaccatgtaaccagctacgtgcgcacaagagagcctgaacagaatcatctttc |
12748785 |
T |
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| Q |
215 |
attgaacttctatac |
229 |
Q |
| |
|
||||||||||||||| |
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|
| T |
12748784 |
attgaacttctatac |
12748770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 106 - 229
Target Start/End: Original strand, 24683429 - 24683552
Alignment:
| Q |
106 |
atataaactataaaacaattgtaaaaatgatagaactataaaaaccataccttcaaaaccatgtaaccagctacgtgcgcacaagagagcctgaacagaa |
205 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
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| T |
24683429 |
atataaactataaaaccattgtaaaaatgatagaactttaaaaatcataccttcaaaaccatgtaaccagctacgtgcgcacttgagagcctgaacaaaa |
24683528 |
T |
|
| Q |
206 |
tcatctttcattgaacttctatac |
229 |
Q |
| |
|
||||||||||||||| |||||||| |
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| T |
24683529 |
tcatctttcattgaatttctatac |
24683552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 83 - 229
Target Start/End: Complemental strand, 27971672 - 27971526
Alignment:
| Q |
83 |
ttcagtcagttctattgacaataatataaactataaaacaattgtaaaaatgatagaactataaaaaccataccttcaaaaccatgtaaccagctacgtg |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27971672 |
ttcagtcagttctattgacaataatataaactataaaacaattgtaaaaatgatagaactataaaaaccataccttcaaaaccatgtaaccagctacgtg |
27971573 |
T |
|
| Q |
183 |
cgcacaagagagcctgaacagaatcatctttcattgaacttctatac |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27971572 |
cgcacaagagagcctgaacagaatcatctttcattgaacttctatac |
27971526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 83 - 229
Target Start/End: Original strand, 6885501 - 6885647
Alignment:
| Q |
83 |
ttcagtcagttctattgacaataatataaactataaaacaattgtaaaaatgatagaactataaaaaccataccttcaaaaccatgtaaccagctacgtg |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
6885501 |
ttcagtcagttctattgacaataatataaactataaaacaattgtaaaaatgatagaactataaaaaccataccttcaaaaccatgcaaccagctacgtg |
6885600 |
T |
|
| Q |
183 |
cgcacaagagagcctgaacagaatcatctttcattgaacttctatac |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6885601 |
cgcacaagagagcctgaacagaatcatctttcattgaacttctatac |
6885647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 83 - 229
Target Start/End: Complemental strand, 33985285 - 33985139
Alignment:
| Q |
83 |
ttcagtcagttctattgacaataatataaactataaaacaattgtaaaaatgatagaactataaaaaccataccttcaaaaccatgtaaccagctacgtg |
182 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33985285 |
ttcagtcagttctatcgacaataatataaactataaaacaattgtaaaaatgatagaactataaaaaccataccttcaaaaccatgtaaccagttacgtg |
33985186 |
T |
|
| Q |
183 |
cgcacaagagagcctgaacagaatcatctttcattgaacttctatac |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
33985185 |
cgcacaagagagcctgaacagaatcatctttcattgaacttatatac |
33985139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 139; Significance: 7e-73; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 83 - 229
Target Start/End: Complemental strand, 20142759 - 20142613
Alignment:
| Q |
83 |
ttcagtcagttctattgacaataatataaactataaaacaattgtaaaaatgatagaactataaaaaccataccttcaaaaccatgtaaccagctacgtg |
182 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
20142759 |
ttcagtcagttctcttgacaataatataaactataaaacaattgtaaaaatgatagaactataaaaaccataccttcaaaaccatgtaaccagctatgtg |
20142660 |
T |
|
| Q |
183 |
cgcacaagagagcctgaacagaatcatctttcattgaacttctatac |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20142659 |
cgcacaagagagcctgaacagaatcatctttcattgaacttctatac |
20142613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 83 - 229
Target Start/End: Original strand, 22190080 - 22190226
Alignment:
| Q |
83 |
ttcagtcagttctattgacaataatataaactataaaacaattgtaaaaatgatagaactataaaaaccataccttcaaaaccatgtaaccagctacgtg |
182 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
22190080 |
ttcagtcagttctcttgacaataatataaactataaaacaattgtaaaaatgatagaactataaaaaccataccttcaaaaccatgtaaccagctatgtg |
22190179 |
T |
|
| Q |
183 |
cgcacaagagagcctgaacagaatcatctttcattgaacttctatac |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22190180 |
cgcacaagagagcctgaacagaatcatctttcattgaacttctatac |
22190226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 27966651 - 27966700
Alignment:
| Q |
117 |
aaaacaattgtaaaaatgatagaactataaaaaccataccttcaaaacca |
166 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||| ||| |||||||||||| |
|
|
| T |
27966651 |
aaaaaaattgtaaaaatgatagaactttaaaagtcatgccttcaaaacca |
27966700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 83 - 229
Target Start/End: Original strand, 3410773 - 3410919
Alignment:
| Q |
83 |
ttcagtcagttctattgacaataatataaactataaaacaattgtaaaaatgatagaactataaaaaccataccttcaaaaccatgtaaccagctacgtg |
182 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3410773 |
ttcaatcagttctattgacaataatataaactataaaacaattgtaaaaatgatagaactataaaaaccataccttcaaaaccatgtaaccagctacgtg |
3410872 |
T |
|
| Q |
183 |
cgcacaagagagcctgaacagaatcatctttcattgaacttctatac |
229 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
3410873 |
cgcacaagagagcctgaacataatcatctttcatttaacttctatac |
3410919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 121; Significance: 4e-62; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 97 - 229
Target Start/End: Original strand, 4971288 - 4971420
Alignment:
| Q |
97 |
ttgacaataatataaactataaaacaattgtaaaaatgatagaactataaaaaccataccttcaaaaccatgtaaccagctacgtgcgcacaagagagcc |
196 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4971288 |
ttgacaacaatataaactataaaacaattgtaaaaatgatagaactataaaaatcataccttcaaaaccatgtaactagctacgtgcgcacaagagagcc |
4971387 |
T |
|
| Q |
197 |
tgaacagaatcatctttcattgaacttctatac |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
4971388 |
tgaacagaatcatctttcattgaacttctatac |
4971420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 94 - 229
Target Start/End: Original strand, 4696708 - 4696835
Alignment:
| Q |
94 |
ctattgacaataatataaactataaaacaattgtaaaaatgatagaactataaaaaccataccttcaaaaccatgtaaccagctacgtgcgcacaagaga |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4696708 |
ctattgacaataatataaactataaaacaattgtaaaaatgatagaacta--------ataccttcaaaaccatgtaaccagctacgtgcgcacaagaga |
4696799 |
T |
|
| Q |
194 |
gcctgaacagaatcatctttcattgaacttctatac |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
4696800 |
gcctgaacagaatcatctttcattgaacttctatac |
4696835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 140
Target Start/End: Complemental strand, 6453289 - 6453254
Alignment:
| Q |
105 |
aatataaactataaaacaattgtaaaaatgatagaa |
140 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6453289 |
aatataaactataaaataattgtaaaaatgatagaa |
6453254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0564 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0564
Description:
Target: scaffold0564; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 10843 - 10912
Alignment:
| Q |
15 |
acatcaatacatgctaaataaactgaactgatttgaaccatattaatggttcagtaccttaaaaccactt |
84 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10843 |
acatcaatacatggtaaataaactgaactgatttgaaccatattaatggttcagtaccttaaaaccactt |
10912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 229
Target Start/End: Original strand, 8097207 - 8097330
Alignment:
| Q |
106 |
atataaactataaaacaattgtaaaaatgatagaactataaaaaccataccttcaaaaccatgtaaccagctacgtgcgcacaagagagcctgaacagaa |
205 |
Q |
| |
|
|||||||||||| ||| ||| |||||||||||||| |||||| |||||| ||||||||||||| | ||||||| ||| |||| || |||| | |
|
|
| T |
8097207 |
atataaactatataaccatttaaaaaatgatagaacattaaaaatggtacctttaaaaccatgtaactaactacgtgtgcaaaagacagatggaaccaat |
8097306 |
T |
|
| Q |
206 |
tcatctttcattgaacttctatac |
229 |
Q |
| |
|
||||||||||||||||| |||||| |
|
|
| T |
8097307 |
tcatctttcattgaactactatac |
8097330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 140
Target Start/End: Original strand, 45451601 - 45451636
Alignment:
| Q |
105 |
aatataaactataaaacaattgtaaaaatgatagaa |
140 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |
|
|
| T |
45451601 |
aatataaactataaaataattgtaaaaatgatagaa |
45451636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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