View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5039_2D_low_9 (Length: 216)
Name: NF5039_2D_low_9
Description: NF5039_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_2D_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 31650398 - 31650597
Alignment:
| Q |
1 |
aaaggagatcccaaggaagagatacatcatgatcattttcctcaaaaccaattgttctcaccggagaatctccagttatgcgattttgatgtttattttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31650398 |
aaaggagatcccaaggaagagatacatcatgatcattttcctcaaaaccaattgttctcaccggagaatctccaattatgcgattttgatgtttattttg |
31650497 |
T |
|
| Q |
101 |
attatttgagacatgtcagtgagtcatcatcgagtgaatctttttaatttgaaaattttatttatcttcataaaactcgttatccgtctaatgagtgatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
31650498 |
attatttgagacatgtcagtgagtcatcatcgagtgaatctttttaatttgagaattttatttttcttcataaaactcgttatccgtctaatgagtgatt |
31650597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 10 - 152
Target Start/End: Original strand, 31657421 - 31657563
Alignment:
| Q |
10 |
cccaaggaagagatacatcatgatcattttcctcaaaaccaattgttctcaccggagaatctccagttatgcgattttgatgtttattttgattatttga |
109 |
Q |
| |
|
|||||||||||||| || |||||| |||||||| | |||||||| || || | ||||| ||||||||||||||||||||||| ||||| |||||||| | |
|
|
| T |
31657421 |
cccaaggaagagatccacaatgatcgttttcctcgagaccaattgctcccatcagagaacctccagttatgcgattttgatgtgtatttcgattatttaa |
31657520 |
T |
|
| Q |
110 |
gacatgtcagtgagtcatcatcgagtgaatctttttaatttga |
152 |
Q |
| |
|
|| |||| ||||||| |||||||| ||||||||||||||||| |
|
|
| T |
31657521 |
gagatgttagtgagttatcatcgatcgaatctttttaatttga |
31657563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University