View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_high_13 (Length: 480)
Name: NF5039_high_13
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 34 - 470
Target Start/End: Complemental strand, 40415830 - 40415395
Alignment:
| Q |
34 |
gtcaagactgtattttacttttgtccatttgtaataaaaatctaataatttatatttactcatgtcaccctgagagatcattctgccctagcctaatact |
133 |
Q |
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| T |
40415830 |
gtcaagactgtattttacttttgtccatttgtaataaaaatctaataatttatatttactcatgtcaccctgagagatcattctgccctagcctaatact |
40415731 |
T |
|
| Q |
134 |
tggacataaagtcgataacggatcaggttcaactaaaaatagacacagcccgatggaaattcatactacaagctaaaattggcacaacacgtcaagataa |
233 |
Q |
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| T |
40415730 |
tggacataaagtcgataacggatcaggttcaactaaaaacagacacagcccgatggaaattcgtactacaagctaaaattggcacaacacgtcaagataa |
40415631 |
T |
|
| Q |
234 |
actttgcattcttcatatgcaagggtttgaattcccgtttgactgatacatacttgtttctaacttttaactttaaattgattttggaaaagaaagnnnn |
333 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40415630 |
actttgcattcttcatatgcaagggtttgaattcccgtttgactgatacatacttgtttctaacttttaactttaaattgattttggaaaagaaag-aaa |
40415532 |
T |
|
| Q |
334 |
nnnnnncattgatttaggtgttaaactcttctttggggatggtgtgttaaacttgcggcgaaaattgacaaatcaagggcagcaacatcacagtgaatcc |
433 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40415531 |
aaaaaacattgatttaggtgttaaactcttctttggggatggtgtgttaaacttgcggcgaaaattgacaaatcaagggcagcaacatcacagtgaatcc |
40415432 |
T |
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| Q |
434 |
ctaagaaacttgtatgtcattaaagaatttaagtata |
470 |
Q |
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| T |
40415431 |
ctaagaaacttgtatgtcattaaagaatttaagtata |
40415395 |
T |
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