View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_high_16 (Length: 434)
Name: NF5039_high_16
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_high_16 |
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| [»] scaffold0090 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 400; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 12 - 419
Target Start/End: Original strand, 22691269 - 22691676
Alignment:
| Q |
12 |
atatataaatagttttaaaatctttaccgatatatgccgaatccattcgaacgtataggtcttgtccgtcttgtgaaattcttaaatcaataagatcacc |
111 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22691269 |
atatataaatagttttaaaatctttaccaatatatgccgaatccattcgaacgtataggtcttgtccgtcttgtgaaattcttaaatcaataagatcacc |
22691368 |
T |
|
| Q |
112 |
taaccagatagagcaaccctttcctgctccaactgggtctaaggatgtatatgctgtgcaagagcaattatttatgcatttgactttgcattcatcaagt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22691369 |
taaccagatagagcaaccctttcctgctccaactgggtctaaggatgtatatgctgtgcaagagcaattatttatgcatttgactttgcattcatcaagt |
22691468 |
T |
|
| Q |
212 |
gtcatgtttgcattaatccaagaatttgttgtatctggaaatttcattccaataaatttacgaaatccgtccctatttttgaccccacaactccaatttc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22691469 |
gtcatgtttgcattaatccaagaatttgttgtatctggaaatttcattccaataaatttacgaaatccgtccctatttttgaccccacaactccaatttc |
22691568 |
T |
|
| Q |
312 |
cgttgcgcatgcatccttgtttccagtccaagctattccacagttcaagtgattttggtttaaatccatctaaacatcgacatgtttgcgatccttcaat |
411 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22691569 |
cgttgcgcacgcatccttgtttccagtccaagctattccacagttcaagtgattttggtttaaatccatctaaacatcgacatgtttgcgatccttcaat |
22691668 |
T |
|
| Q |
412 |
gatgcaat |
419 |
Q |
| |
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|||||||| |
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| T |
22691669 |
gatgcaat |
22691676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 12 - 180
Target Start/End: Original strand, 22708004 - 22708172
Alignment:
| Q |
12 |
atatataaatagttttaaaatctttaccgatatatgccgaatccattcgaacgtataggtcttgtccgtcttgtgaaattcttaaatcaataagatcacc |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||| |
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| T |
22708004 |
atatataaatagttttaaaatctttaccgatatatgtagaatccattcgaacgtataggtcttgtccatgttgtgaagttcttaaatcaataagatcacc |
22708103 |
T |
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| Q |
112 |
taaccagatagagcaaccctttcctgctccaactgggtctaaggatgtatatgctgtgcaagagcaatt |
180 |
Q |
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||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
22708104 |
taatgagatagagcaaccctttcctgctccaattgggtctaaggatgtatatgttgtgcaagagcaatt |
22708172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 82 - 417
Target Start/End: Complemental strand, 28427164 - 28426829
Alignment:
| Q |
82 |
ttgtgaaattcttaaatcaataagatcacctaaccagatagagcaaccctttcctgctccaactgggtctaaggatgtatatgctgtgcaagagcaatta |
181 |
Q |
| |
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|||| ||||||||||||||||||||||||| |||||||| || ||||| | |||||||| || || ||| ||||||| ||||||||||| ||||| |
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| T |
28427164 |
ttgtaaaattcttaaatcaataagatcaccaaaccagatggaacaaccactgactgctccatttgcatccaagtatgtataagctgtgcaagaacaattt |
28427065 |
T |
|
| Q |
182 |
tttatgcatttgactttgcattcatcaagtgtcatgtttgcattaatccaagaatttgttgtatctggaaatttcattccaataaatttacgaaatccgt |
281 |
Q |
| |
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| | |||||| ||||| || | ||||||| ||||| |||||||||||||||||| |||| |||||||||||| |||| |||||| |||| || | |
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| T |
28427064 |
tgaaagcattttgtcttgcaatcgttaagtgtcgtgtttcgattaatccaagaatttgtagtatttggaaatttcatcccaacaaatttttgaaagccat |
28426965 |
T |
|
| Q |
282 |
ccctatttttgaccccacaactccaatttccgttgcgcatgcatccttgtttccagtccaagctattccacagttcaagtgattttggtttaaatccatc |
381 |
Q |
| |
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| ||||||| |||||||||||||||||| | |||| ||||||||| ||||||||| |||||| |||| |||||||||| ||||||||| |
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| T |
28426964 |
cttggtttttgatcccacaactccaatttccactacgcacacatccttgtgtccagtccattgaattccattgttccggtgattttggcttaaatccaag |
28426865 |
T |
|
| Q |
382 |
taaacatcgacatgtttgcgatccttcaatgatgca |
417 |
Q |
| |
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||||||| |||| || ||||||| ||||||||||| |
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| T |
28426864 |
taaacattgacacattggcgatccatcaatgatgca |
28426829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 158 - 341
Target Start/End: Complemental strand, 28418556 - 28418373
Alignment:
| Q |
158 |
gtatatgctgtgcaagagcaattatttatgcatttgactttgcattcatcaagtgtcatgtttgcattaatccaagaatttgttgtatctggaaatttca |
257 |
Q |
| |
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||||| ||||||||||| ||||| | | ||||||| |||||| || | ||||||||||||| |||||||||||||||||||||||| || || |||| |
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| T |
28418556 |
gtataagctgtgcaagaacaattttgcaagcatttggttttgcaatcttgaagtgtcatgtttagattaatccaagaatttgttgtatcgggtaacttca |
28418457 |
T |
|
| Q |
258 |
ttccaataaatttacgaaatccgtccctatttttgaccccacaactccaatttccgttgcgcatgcatccttgtttccagtcca |
341 |
Q |
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| | || |||||| |||| || || | ||||| | |||||| ||||||||||| ||||| |||||||| ||||||||| |
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| T |
28418456 |
tcctaacaaatttctgaaacccatctcggtttttaatcccacagctccaatttccaccgcgcacacatccttgcgtccagtcca |
28418373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 12 - 180
Target Start/End: Complemental strand, 1290836 - 1290668
Alignment:
| Q |
12 |
atatataaatagttttaaaatctttaccgatatatgccgaatccattcgaacgtataggtcttgtccgtcttgtgaaattcttaaatcaataagatcacc |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| | ||||||| |||||||||||||||||||||| |
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| T |
1290836 |
atatataaatagttttaaaatctttaccgatatatgtagaatccattcaaacgtataggtcttgtccatgttgtgaagttcttaaatcaataagatcacc |
1290737 |
T |
|
| Q |
112 |
taaccagatagagcaaccctttcctgctccaactgggtctaaggatgtatatgctgtgcaagagcaatt |
180 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
1290736 |
taaccagatagagcaaccctttcctgctccaattgggtctaaggatgtatatgttgtgcaagagcaatt |
1290668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0090 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0090
Description:
Target: scaffold0090; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 341
Target Start/End: Original strand, 9594 - 9738
Alignment:
| Q |
197 |
ttgcattcatcaagtgtcatgtttgcattaatccaagaatttgttgtatctggaaatttcattccaataaatttacgaaatccgtccctatttttgaccc |
296 |
Q |
| |
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||||| |||||||||||||| || ||| ||||||||||| | |||||||| |||||||||||| ||| ||| ||| ||||| || | ||||| || |
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|
| T |
9594 |
ttgcaatcatcaagtgtcattttctcatcaatccaagaatgcatagtatctggtaatttcattccagtaattttcttaaacccgtctctgtctttgatcc |
9693 |
T |
|
| Q |
297 |
cacaactccaatttccgttgcgcatgcatccttgtttccagtcca |
341 |
Q |
| |
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||||||||||||| | || |||| ||||||||| ||||||||| |
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| T |
9694 |
cacaactccaattactattacgcacacatccttgtgtccagtcca |
9738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 341
Target Start/End: Complemental strand, 13854189 - 13854137
Alignment:
| Q |
289 |
tttgaccccacaactccaatttccgttgcgcatgcatccttgtttccagtcca |
341 |
Q |
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||||||||||||||||||||| ||||| ||| |||||||| |||||||||| |
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| T |
13854189 |
tttgaccccacaactccaattaccgttatgcacacatccttgcttccagtcca |
13854137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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