View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_high_19 (Length: 411)
Name: NF5039_high_19
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 42237793 - 42238188
Alignment:
| Q |
1 |
tatcttaaacaattgcacacaagccaatcccatctgattcaaaacaacaccnnnnnnngcagattttctttccccactggttctcagtttcaacacagca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42237793 |
tatcttaaacaattgcacacaagccaatcccatctgattcaaaacaacaccaaaaaaagcagattttctttccccactagttctcagtttcaacacagca |
42237892 |
T |
|
| Q |
101 |
ctctcaaaagcacttctcgcctcatcgtacttcccaatcatataatacatcactcccattcgtgcttctatccccgcaactgtactctgctgtccaggtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42237893 |
ctctcaaaagcacttctcgcctcatcgtacttcccaatcatataatacatcactcccattcgtgcttctatccccgcaactgtactctgctgtccaggtt |
42237992 |
T |
|
| Q |
201 |
tatcttccaacaatttcatggctttctgcaaaagcttcaacgcctcctccggatcatcaacagattcaaatatcgctgaaacctcagtcaaaccaccagc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42237993 |
tatcttccaacaatttcatggctttctgcaaaagcttcaacgcctcctccggatcatcaacagattcaaatatcgctgaaacctcagtcaaaccaccagc |
42238092 |
T |
|
| Q |
301 |
aatctcctctgcagtagttccaggaactggcttcgagtaaattctaagagcattttcgcaataagattttgattcacgaagtttccctgtcctatg |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42238093 |
aatctcctctgcagtagttccaggaactggcttcgagtaaattctaagagcattttcgcaataagattttgattcacgaagtttccctgtcctatg |
42238188 |
T |
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