View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_high_25 (Length: 350)
Name: NF5039_high_25
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 19 - 264
Target Start/End: Complemental strand, 32273255 - 32273016
Alignment:
| Q |
19 |
gaggagagtgtctataagggcaagaccaactttgaattgtgtgcccatccatatggtaatattaattgttagggttgataatactattaattgttttatg |
118 |
Q |
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| T |
32273255 |
gaggagagtgtctataagggcaagaccaactttgaattgtgtgcccatccatat--------taattgttagggttgataatactattaattgttttatg |
32273164 |
T |
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| Q |
119 |
acnnnnnnnnnn--gttnnnnnnntgttttacgacattgcatcaaatttagcattgtttttcattattatagtaaatagatccgcatgttgcttcgagac |
216 |
Q |
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|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32273163 |
acttttttttttttgttaaaaaaatgttttacgacattgcatcaaatttagcattgtttttcattattatagtaaatagatccgcatgttgcttcgagac |
32273064 |
T |
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| Q |
217 |
tcattcctatttccttgttccctcagaaacagaaacaagtacaacgag |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32273063 |
tcattcctatttccttgttccctcagaaacagaaacaagtacaacgag |
32273016 |
T |
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