View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_high_27 (Length: 325)
Name: NF5039_high_27
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_high_27 |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 19 - 309
Target Start/End: Original strand, 31610370 - 31610661
Alignment:
| Q |
19 |
aaaactatggactatcatcagagtgtagtctatgccgcctataagccataacagatactcgtaaccaagatctaaccaaaagcatcagtaaaaaaccaga |
118 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31610370 |
aaaactatggactatcatcagagcgtagtctatgccgcctataagccataacagatactcgtaaccaagatctaaccaaaagcatcagtaaaaagccaga |
31610469 |
T |
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| Q |
119 |
atcctactatcatagttatatcataccataatgatataaataagatcatcttgcttcgaaaacaaaattctgaaacacctaaatccagaataagaatagg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31610470 |
atcctactatcatagttatatcataccataatgatataaataagatcatcttgcttcgaaaacaaaattctgaaacacctaaatccagaataagaatagg |
31610569 |
T |
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| Q |
219 |
aattaaatttcagtcaaattttgaagcaaaataatatcacaaacaaaaataatgtattcaaaatgatgatc-tgattggccttaaggttcat |
309 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
31610570 |
aatcaaatttcagtcaaattttgaagcaaaataatatcacaaacaaaaagaatgtattcaaaatgatgatcttgattggccttaaggttcat |
31610661 |
T |
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