View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_high_31 (Length: 313)
Name: NF5039_high_31
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_high_31 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 835055 - 835373
Alignment:
| Q |
1 |
taatgtgcatatatgccaatactgggattcaatgtaaaccccgtggtaccaagttcgattcatactnnnnnnntagannnnnnnctccttttgtgacttg |
100 |
Q |
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| T |
835055 |
taatgtgcatatatgccaatactgggattcaatgtaaaccccgtggtaccaagttcgattcatactaaaaaaatagatttttttctccttttgtgacttg |
835154 |
T |
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| Q |
101 |
ccataatttcaaattggttgattctggatatatgagttcttttttcataactttagatatacaatagaacttctcttggaatgttctgcacaatgattgg |
200 |
Q |
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| T |
835155 |
ccataatttcaaattggttgattctggatatatgagttcttttttcataactttagatatacaatagaacttctcttggaatgttctgcacaatgattgg |
835254 |
T |
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| Q |
201 |
tattgatacctagca----------------taacaaatagtactattagtaatatattgctcctctcaatcactaatacatggaatgaatttgtaattc |
284 |
Q |
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||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
835255 |
tattgatacctagcatacctaaagtcttttctaacaaatagtactgttagtaatatattgctcctctcaatcactaatacatggaatgaatttgtaattc |
835354 |
T |
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| Q |
285 |
ttacatctactggcctttg |
303 |
Q |
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| T |
835355 |
ttacatctactggcctttg |
835373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 98 - 203
Target Start/End: Original strand, 813443 - 813547
Alignment:
| Q |
98 |
ttgccataatttcaaattggttgattctggatatatgagttcttt-tttcataactttagatatacaatagaacttctcttggaatgttctgcacaatga |
196 |
Q |
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| T |
813443 |
ttgcaatagtttcaaattggttgattctggatacatcacttctttctttcataacgtta--tatacactagatcctctctaggaatgttctgcacaataa |
813540 |
T |
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| Q |
197 |
ttggtat |
203 |
Q |
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||||||| |
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| T |
813541 |
ttggtat |
813547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 294
Target Start/End: Original strand, 813597 - 813628
Alignment:
| Q |
263 |
acatggaatgaatttgtaattcttacatctac |
294 |
Q |
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| T |
813597 |
acatggaatgaatttgtaattcttacatctac |
813628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 813350 - 813403
Alignment:
| Q |
12 |
tatgccaatactgggattcaatgtaaaccccgtggtaccaagttcgattcatact |
66 |
Q |
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| T |
813350 |
tatgccaagattgggattcaatgtaaactc-gtggtgccaagttcgattcatact |
813403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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