View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_high_34 (Length: 306)
Name: NF5039_high_34
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_high_34 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 87 - 288
Target Start/End: Complemental strand, 20750837 - 20750636
Alignment:
| Q |
87 |
ttattgatgtaaccacgactttgtggtggtatgataaactcttaaggttgtgccgccatcaaaccaacatgtggtcactcaacgccaacatcatcatttc |
186 |
Q |
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| T |
20750837 |
ttattgatgtaaccacgactttgtggtggtgtgataaactcttaaggttgtgtcgccatgaaaccaacatggggtcactcaacgccaacatcatcatttc |
20750738 |
T |
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| Q |
187 |
ttgccatggtagctcccaaaatgcgtttgtgtttgtttgatgatcaaccctttgtttttgtctaagcataaaccatgttagtgttcttcaatttgttcat |
286 |
Q |
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| T |
20750737 |
ttgccatggtagctcccaaaatgcttttgtgtttgtttgatgatcaaccctttgtttttgtctaagcataaaccatgttagtgttcttcaatttgttcat |
20750638 |
T |
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| Q |
287 |
gg |
288 |
Q |
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|| |
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| T |
20750637 |
gg |
20750636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 121
Target Start/End: Complemental strand, 16748746 - 16748706
Alignment:
| Q |
81 |
caatttttattgatgtaaccacgactttgtggtggtatgat |
121 |
Q |
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||||| ||| |||||||||||||||||||||||||| |||| |
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| T |
16748746 |
caattgttactgatgtaaccacgactttgtggtggtgtgat |
16748706 |
T |
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