View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5039_high_37 (Length: 299)
Name: NF5039_high_37
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_high_37 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 17149444 - 17149703
Alignment:
| Q |
18 |
aatgtataccttgatagatggattgtttttggggcaattgagcgattgtcaaagaagttagggttgacagctttgttctctcttccaaatagcnnnnnnn |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
17149444 |
aatgtataccttgatagatggattgtttttggggcaattgagcgattgtcaaagaagttagggttgacagccttgttctctcttccaaat-gcttttttt |
17149542 |
T |
|
| Q |
118 |
ngccgtttggtattttgagttattttgacctaatagagatactcctccgtcccnnnnnnnatacgatttttataggagtagtttccaaaaatgacggata |
217 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||| ||||||||||| ||| |||||||||||||| |||| |||||||||| |||| |
|
|
| T |
17149543 |
tgccgtttggta--ttgagttattttgacctaat--agataatcctccgtccctttttttatagaatttttataggagtggtttacaaaaatgaccgata |
17149638 |
T |
|
| Q |
218 |
ttnnnnnnngttgtttaagta--ataaagttgtctgtgtgcactaccaaaacaaaaaagttgtctgtg |
283 |
Q |
| |
|
|| ||||| |||| ||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
17149639 |
ttaaaaaaa-ttgttggagtaatataaagttgtctgtgtgcactaccaaa--aaaaaagttgtctgtg |
17149703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University