View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_high_4 (Length: 717)
Name: NF5039_high_4
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 626; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 626; E-Value: 0
Query Start/End: Original strand, 18 - 706
Target Start/End: Complemental strand, 29663777 - 29663095
Alignment:
| Q |
18 |
ttccatacaaggtttcaataatatgttggagcactatattattatttttaattggatttggatttggatttaggaattacgaatgttgagttgtaatagt |
117 |
Q |
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| T |
29663777 |
ttccatacaaggtttcaataatatgttgcagcactatattattatttttaattggatttggattt------aggaattacgaatgttgagttgtaatagt |
29663684 |
T |
|
| Q |
118 |
ggcgtcagctttgatgctggcaacaactgacgcttgcttggagtacaatcttcaaccacatattcaactgaacaccttctgctgtgtttggataatgtat |
217 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
29663683 |
ggcttcagctttgatgctggcaacaactgacgcttgcttggagtacaatcttcaaccacatattaaactgaacaccttctgctgtgtttggataatgtat |
29663584 |
T |
|
| Q |
218 |
gcagcacaatttacagtcaacagttgaacaactagcaacttatttgtggccaaaattgctccacaaaccaatataggaaatgtgagacattatttaataa |
317 |
Q |
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| T |
29663583 |
gcagcacaatttacagtcaacagttgaacaactagcaacttatttgtggccaaaattgctccacaaaccaatataggaaatgtgagacattatttaataa |
29663484 |
T |
|
| Q |
318 |
ctaaagaattaaaaacttaatcatacaatgtgcagtatcaatgcattggtatggtttggcttggtgaagaagttagagtggatgtaggtgtattagatca |
417 |
Q |
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| T |
29663483 |
ctaaagaattaaaaacttaatcatacaatgtgtagtatcaatgcattggtatggtttcgcttggtggagaagttagagtggatgtaggtgtattagatca |
29663384 |
T |
|
| Q |
418 |
ttatcaaacatatataggatgtggatgactcacacgttataaaattatcggattcaagtatgaatagttatttgttattgctcttgccactctccctatc |
517 |
Q |
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| T |
29663383 |
ttatcaaacatatataggatgtggatgactcacacgttataaaattatcggattcaagtatgaatagttatttgttgttgctcttgccactctccctatc |
29663284 |
T |
|
| Q |
518 |
ttgttgagtatgactcatatatagacacggaagaggggaagggatatggaagctgagctagtgaagctccctccgcccctgcccttgaattttactcaaa |
617 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29663283 |
ttgttgagtatgactcatatatagacacggaagaggggaaggggtatggaagctgagctagtgaagctccctccgcccctgcccttgaattttactcaaa |
29663184 |
T |
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| Q |
618 |
cgtatgttaggcccaactatttgttgggggcaaatggggtgcatgggcgatagcccccgcaatacaattcaggagtattagtataatct |
706 |
Q |
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| T |
29663183 |
cgtatgttaggcccaactatttgttgggggcaaatggggtgcataggcgatagcccccggaatacaattcaggagtattagtataatct |
29663095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 518 - 560
Target Start/End: Complemental strand, 34251287 - 34251245
Alignment:
| Q |
518 |
ttgttgagtatgactcatatatagacacggaagaggggaaggg |
560 |
Q |
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| T |
34251287 |
ttgttgagtatgactcatatatagacacaaaagagggcaaggg |
34251245 |
T |
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