View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_high_43 (Length: 284)
Name: NF5039_high_43
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_high_43 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 23 - 272
Target Start/End: Original strand, 6089348 - 6089597
Alignment:
| Q |
23 |
taaatcatagatccatatctttgtagattcaactccaaaggtaaattactactaacacttttatttgatgaaagtgacaaagacaaaggttcatgattat |
122 |
Q |
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| T |
6089348 |
taaatcatagatccatatctttgtagattcaactccaaaggtaaattactactaacacttttatttgatgaaagtgacaaagacaaaggttcatgattat |
6089447 |
T |
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| Q |
123 |
tcaacatcatagtacttgtactactatgttgttcatcaaattgtctaagattttgaatgttttgtgcttgataaagaaaagggttattattatttccttg |
222 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6089448 |
tcaacatcatagtactagtactactatgttgttcatcaaattgtctaagattttgaatgttttgtgcttgataaagaaaagggttattattatttccttg |
6089547 |
T |
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| Q |
223 |
attgttattcaaagtctcaaaataaggattagaagaagaaatattgatga |
272 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6089548 |
attgttattcaaagtctcaaaataaggattagaagaagaaatattcatga |
6089597 |
T |
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