View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_high_44 (Length: 283)
Name: NF5039_high_44
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_high_44 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 2529502 - 2529262
Alignment:
| Q |
1 |
ggaagtgatggcttcataactttcaccaatcttaaaaataaaggctcaagtggttcatcgacaacaagaatacctcaagattcttgtagtacaccacaac |
100 |
Q |
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| T |
2529502 |
ggaagtgatggcttcataactttcaccaatcttaaaaataaaggctcaagtggttcatcgacaacaagaatacctcaagattcttgtagtacaccacaac |
2529403 |
T |
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| Q |
101 |
cttgtggaccttataacatatgcattggtgacaaaaaatgcagttgcccttctgttcttagctccagtcctagttgtgaaccgggttttgtttctccttg |
200 |
Q |
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| T |
2529402 |
cttgtggaccttataacatatgcattggtgacaaaaaatgcagttgcccttctgttcttagctccagtcctagctgtgaaccgggttttgtttcgccttg |
2529303 |
T |
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| Q |
201 |
taactcgaaaagttccgttgagcttgttaaaggtgatgatg |
241 |
Q |
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| T |
2529302 |
taactcgaaaagttccgttgagcttgttaaaggtgatgatg |
2529262 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 31027917 - 31027961
Alignment:
| Q |
62 |
caacaagaatacctcaagattcttgtagtacaccacaaccttgtg |
106 |
Q |
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| T |
31027917 |
caacaagaataccacaagattattgtggtacaccagaaccttgtg |
31027961 |
T |
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