View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_high_47 (Length: 266)
Name: NF5039_high_47
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_high_47 |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 26309755 - 26310013
Alignment:
| Q |
1 |
agtgccttcttttccataaagtatattatcattgaagtgctcgaagggtataggtaacagacacaataaaagtaaagacttatcctcttcctcaatattc |
100 |
Q |
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| T |
26309755 |
agtgccttcttttccataaagtatattatcattgaagtgctcgaatggtataggtaacagacacaataaaagtaaagacttatcctcttcctcaatattc |
26309854 |
T |
|
| Q |
101 |
accaaatgatcaactatattttaaactccattagtttctccgcaatatattgagtccaccatcctaaatgaataaagttattgtttcaagaattgagaca |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
26309855 |
accaaatgatcaactatattttaaactccattggtttctctgcaatatattgagtccaccatcctaaatgaatggagttattgtttcaagaattgagata |
26309954 |
T |
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| Q |
201 |
ataaacttagtcatatacaatgaatccaacttggttcacattgacgtcatgttcatctc |
259 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
26309955 |
ataaacttagtcatatacagtgaatccaacttggttcacattgacgtcatgttcttctc |
26310013 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 32429288 - 32429328
Alignment:
| Q |
155 |
tccaccatcctaaatgaataaagttattgtttcaagaattg |
195 |
Q |
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||||||||||||||||| || |||| ||||||||||||||| |
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| T |
32429288 |
tccaccatcctaaatgagtagagttgttgtttcaagaattg |
32429328 |
T |
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