View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_high_48 (Length: 262)
Name: NF5039_high_48
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_high_48 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 17 - 262
Target Start/End: Original strand, 8582297 - 8582542
Alignment:
| Q |
17 |
aaaattaaaatggtgatatatcatttgttgttctgatatcaaaataaaaataacaattataataataagtaaaagagcgaaatatgtttttggtttctaa |
116 |
Q |
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| T |
8582297 |
aaaattaaaatggtgatatatcatttgttgttcagatatcaaaataaaaataacaattataataataagtaaaagagcgaaatatgtttttggtttctaa |
8582396 |
T |
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| Q |
117 |
atattttgaattttgtttttgatctagtaggaggatatgcttccctataatagtagctgtactcttttactgaattttatcgaatttcattgaatattgt |
216 |
Q |
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| T |
8582397 |
atattttgaattttgtttttgatctagtaggaggatatgcttccctataatagtagctgtactcttttactgaattttatcgaatttcattgaatattgt |
8582496 |
T |
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| Q |
217 |
tttgtagttatgtacatatacactaaaaactgagtatacagatatt |
262 |
Q |
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| T |
8582497 |
tttgtagttatgtacatatacactaaaaactgagtatacagatatt |
8582542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 17 - 115
Target Start/End: Original strand, 8570908 - 8571007
Alignment:
| Q |
17 |
aaaattaaaatggtgatatatcatttgttgttctgatat-caaaataaaaataacaattataataataagtaaaagagcgaaatatgtttttggtttcta |
115 |
Q |
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||||||||||| ||||| ||||||| |||||| ||| | ||||||||||||||||| |||||||| |||||||||||| ||||||||||||||| |||| |
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| T |
8570908 |
aaaattaaaatagtgatgaatcatttcttgttcagatgttcaaaataaaaataacaactataataagaagtaaaagagctaaatatgtttttggtctcta |
8571007 |
T |
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